Lipid fingerprint‐based histology accurately classifies nevus, primary melanoma, and metastatic melanoma samples

Author:

Huergo‐Baños Cristina1ORCID,Velasco Verónica23ORCID,Garate Jone1ORCID,Fernández Roberto1,Martín‐Allende Javier4ORCID,Zabalza Ignacio35,Artola Juan L.36,Martí Rosa M.78ORCID,Asumendi Aintzane39ORCID,Astigarraga Egoitz10ORCID,Barreda‐Gómez Gabriel10ORCID,Fresnedo Olatz11ORCID,Ochoa Begoña11ORCID,Boyano Maria D.39ORCID,Fernández José A.1ORCID

Affiliation:

1. Department of Physical Chemistry, Faculty of Science and Technology University of the Basque Country (UPV/EHU) Leioa Spain

2. Department of Pathology Cruces University Hospital Barakaldo Spain

3. Biocruces‐Bizkaia Health Research Institute, Cruces University Hospital Barakaldo Spain

4. Languages and Computer Systems, School of Engineering University of the Basque Country (UPV/EHU) Bilbao Spain

5. Department of Pathology Galdakao‐Usansolo University Hospital Galdakao Spain

6. Department of Dermatology Galdakao‐Usansolo University Hospital Galdakao Spain

7. Department of Dermatology Arnau de Vilanova University Hospital, Institute of Biomedic Research (IRBLleida), University of Lleida Lleida Spain

8. Centre of Biomedical Research on Cancer (CIBERONC), Instituto de Salud Carlos III (ISCIII) Madrid Spain

9. Department of Cell Biology and Histology, Faculty of Medicine and Nursing University of the Basque Country (UPV/EHU) Leioa Spain

10. Department R+D IMG Pharma Biotech S.L. Derio Spain

11. Department of Physiology, Faculty of Medicine and Nursing University of the Basque Country (UPV/EHU) Leioa Spain

Abstract

AbstractProbably, the most important factor for the survival of a melanoma patient is early detection and precise diagnosis. Although in most cases these tasks are readily carried out by pathologists and dermatologists, there are still difficult cases in which no consensus among experts is achieved. To deal with such cases, new methodologies are required. Following this motivation, we explore here the use of lipid imaging mass spectrometry as a complementary tool for the aid in the diagnosis. Thus, 53 samples (15 nevus, 24 primary melanomas, and 14 metastasis) were explored with the aid of a mass spectrometer, using negative polarity. The rich lipid fingerprint obtained from the samples allowed us to set up an artificial intelligence‐based classification model that achieved 100% of specificity and precision both in training and validation data sets. A deeper analysis of the image data shows that the technique reports important information on the tumor microenvironment that may give invaluable insights in the prognosis of the lesion, with the correct interpretation.

Funder

Agencia Estatal de Investigación

Eusko Jaurlaritza

Euskal Herriko Unibertsitatea

Publisher

Wiley

Subject

Cancer Research,Oncology

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