Blood‐based multivariate methylation risk score for cognitive impairment and dementia

Author:

Koetsier Jarno12,Cavill Rachel3,Reijnders Rick1,Harvey Joshua4,Homann Jan5,Kouhsar Morteza4,Deckers Kay1,Köhler Sebastian1,Eijssen Lars M. T.16,van den Hove Daniel L. A.17,Demuth Ilja89,Düzel Sandra10, ,Smith Rebecca G.4,Smith Adam R.4,Burrage Joe4,Walker Emma M.4,Shireby Gemma4,Hannon Eilis4,Dempster Emma4,Frayling Tim4,Mill Jonathan4,Dobricic Valerija11,Johannsen Peter12,Wittig Michael13,Franke Andre13,Vandenberghe Rik14,Schaeverbeke Jolien14,Freund‐Levi Yvonne151617,Frölich Lutz18,Scheltens Philip19,Teunissen Charlotte E.20,Frisoni Giovanni21,Blin Olivier22,Richardson Jill C.23,Bordet Régis24,Engelborghs Sebastiaan2526,de Roeck Ellen25,Martinez‐Lage Pablo27,Tainta Mikel27,Lleó Alberto28,Sala Isabel28,Popp Julius29,Peyratout Gwendoline30,Verhey Frans1,Tsolaki Magda31,Andreasson Ulf32,Blennow Kaj32333435,Zetterberg Henrik3236373839,Streffer Johannes40,Vos Stephanie J. B.1,Lovestone Simon41,Visser Pieter‐Jelle117,Lill Christina M.542,Bertram Lars11,Lunnon Katie4,Pishva Ehsan14ORCID

Affiliation:

1. Department of Psychiatry and Neuropsychology School for Mental Health and Neuroscience (MHeNs), Faculty of Health, Medicine and Life Sciences (FHML), Maastricht University Maastricht The Netherlands

2. Department of Biochemistry Cardiovascular Research Institute Maastricht (CARIM), Faculty of Health, Medicine and Life Sciences (FHML), Maastricht University Maastricht The Netherlands

3. Department of Advanced Computing Sciences (DACS) Faculty of Science and Engineering (FSE) Maastricht University Maastricht The Netherlands

4. Medical School Faculty of Health and Life Sciences University of Exeter Exeter UK

5. Institute of Epidemiology and Social Medicine University of Münster Münster Germany

6. Department of Bioinformatics ‐ BiGCaT Research Institute of Nutrition and Translational Research in Metabolism (NUTRIM) Faculty of Health Medicine and Life Sciences (FHML), Maastricht University Maastricht The Netherlands

7. Department of Psychiatry Psychosomatics and Psychotherapy, University of Wuerzburg, Dr. Manuel Nagel Würzburg Germany

8. Department of Endocrinology and Metabolic Diseases (including Division of Lipid Metabolism) Charité – Universitätsmedizin Berlin corporate member of Freie Universität Berlin and Humboldt‐Universität zu Berlin Berlin Germany

9. BCRT ‐ Berlin Institute of Health Center for Regenerative Therapies Berlin Institute of Health at Charité – Universitätsmedizin Berlin Berlin Germany

10. Center for Lifespan Psychology, Max Planck Institute for Human Development Berlin Germany

11. Lübeck Interdisciplinary Platform for Genome Analytics (LIGA), University of Lübeck Lübeck Germany

12. Danish Dementia Research Centre, Rigshospitalet Copenhagen Denmark

13. Institute of Clinical Molecular Biology, Christian‐Albrechts‐University of Kiel Kiel Germany

14. Laboratory for Cognitive Neurology, KU Leuven Leuven Belgium

15. Department of Clinical Science and Education Södersjukhuset, Karolinska Institutet Stockholm Sweden

16. School of Medical Sciences Örebro University Örebro Sweden

17. Department of Geriatrics Södertälje Hospital Södertälje Sweden

18. Department of Geriatric Psychiatry Central Institute of Mental Health; Medical Faculty Mannheim/Heidelberg University Mannheim Germany

19. Department of Neurology Alzheimer Center Amsterdam Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam UMC Amsterdam The Netherlands

20. Neurochemistry Laboratory Department of Laboratory Medicine Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam UMC Amsterdam The Netherlands

21. Memory Center Geneva University and University Hospitals; on behalf of the AMYPAD Consortium Genève Switzerland

22. Aix‐Marseille University‐CNRS Marseille France

23. Neuroscience Therapeutic Area, GlaxoSmithKline R&D Stevenage Hertfordshire UK

24. Université de Lille Lille Cedex France

25. Department of Biomedical Sciences University of Antwerp Antwerpen Belgium

26. Neuroprotection & Neuromodulation (NEUR) Research Group, Center for Neurosciences (C4N), Vrije Universiteit Brussel (VUB) Jette, Brussels Belgium

27. Center for Research and Advanced Therapies CITA‐Alzheimer Foundation Gipuzkoa Spain

28. Neurology Department Centro de Investigación en Red en enfermedades neurodegenerativas (CIBERNED), Hospital Sant Pau, Sant Antoni Maria Claret Barcelona Spain

29. University Hospital of Psychiatry Zürich University of Zürich Zürich Switzerland

30. Department of Psychiatry University Hospital of Lausanne (CHUV) Lausanne Switzerland

31. 1st Department of Neurology School of Medicine `Laboratory of Neurodegenerative Diseases Center for Interdisciplinary Research and Innovation Aristotle University of Thessaloniki, and Alzheimer Hellas, Macedonia, Balkan Center Thessaloniki Greece

32. Institute of Neuroscience and Physiology Department of Psychiatry and Neurochemistry The Sahlgrenska Academy at University of Gothenburg Göteborg Sweden

33. Clinical Neurochemistry Lab Sahlgrenska University Hospital Göteborg Sweden

34. Paris Brain Institute ICM, Pitié‐Salpêtrière Hospital Sorbonne University Paris France

35. Neurodegenerative Disorder Research Center Division of Life Sciences and Medicine and Department of Neurology Institute on Aging and Brain Disorders University of Science and Technology of China and First Affiliated Hospital of USTC Hefei P.R. China

36. Department of Neurodegenerative Disease UCL Institute of Neurology, Queen Square London UK

37. UK Dementia Research Institute at UCL, Maple House London UK

38. Hong Kong Center for Neurodegenerative Diseases Clear Water Bay Shatin, N.T. Hong Kong China

39. Wisconsin Alzheimer's Disease Research Center University of Wisconsin School of Medicine and Public Health University of Wisconsin‐Madison Madison Wisconsin USA

40. AC Immune SA, formerly Janssen R&D, LLC. Beerse, Belgium at the time of study conduct Lausanne Switzerland

41. University of Oxford Oxford, United Kingdom; Currently at Johnson & Johnson Innovative Medicines Beerse Belgium

42. Ageing Epidemiology Research Unit, School of Public Health, Imperial College, South Kensington Campus London UK

Abstract

AbstractINTRODUCTIONThe established link between DNA methylation and pathophysiology of dementia, along with its potential role as a molecular mediator of lifestyle and environmental influences, positions blood‐derived DNA methylation as a promising tool for early dementia risk detection.METHODSIn conjunction with an extensive array of machine learning techniques, we employed whole blood genome‐wide DNA methylation data as a surrogate for 14 modifiable and non‐modifiable factors in the assessment of dementia risk in independent dementia cohorts.RESULTSWe established a multivariate methylation risk score (MMRS) for identifying mild cognitive impairment cross‐sectionally, independent of age and sex (P = 2.0 × 10−3). This score significantly predicted the prospective development of cognitive impairments in independent studies of Alzheimer's disease (hazard ratio for Rey's Auditory Verbal Learning Test (RAVLT)‐Learning = 2.47) and Parkinson's disease (hazard ratio for MCI/dementia = 2.59).DISCUSSIONOur work shows the potential of employing blood‐derived DNA methylation data in the assessment of dementia risk.Highlights We used whole blood DNA methylation as a surrogate for 14 dementia risk factors. Created a multivariate methylation risk score for predicting cognitive impairment. Emphasized the role of machine learning and omics data in predicting dementia. The score predicts cognitive impairment development at the population level.

Funder

National Institute for Health and Care Research

Cure Alzheimer's Fund

Stiftelsen för Gamla Tjänarinnor

UK Dementia Research Institute

Medical Research Council

National Institute on Aging

National Institute of Biomedical Imaging and Bioengineering

Vetenskapsrådet

Publisher

Wiley

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