Protein structure modeling for CASP10 by multiple layers of global optimization-Reference-Cited by-同舟云学术

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Protein structure modeling for CASP10 by multiple layers of global optimization

Published:2013-10-24 Issue: Volume:82 Page:188-195
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Joo Keehyoung¹²,Lee Juyong¹,Sim Sangjin¹,Lee Sun Young¹,Lee Kiho¹,Heo Seungryong¹,Lee In-Ho¹³,Lee Sung Jong¹⁴,Lee Jooyoung⁵¹

Affiliation:

1. Center for In Silico Protein Science; Korea Institute for Advanced Study; Dongdaemun-gu Seoul 130-722 Korea

2. Center for Advanced Computation; Korea Institute for Advanced Study; Dongdaemun-gu Seoul 130-722 Korea

3. Korea Research Institute of Standards and Science (KRISS); Yuseong Daejeon 305-600 Korea

4. Department of Physics; University of Suwon; Hwaseong-Si Gyeonggi-do 445-743 Korea

5. School of Computational Sciences; Korea Institute for Advanced Study; Dongdaemun-gu Seoul 130-722 Korea

Funder

Korea government

National Institute of Supercomputing and Networking/Korea Institute of Science and Technology Information

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/prot.24397/fullpdf

Reference19 articles.

1. High accuracy template based modeling by global optimization;Joo;Proteins,2007

2. All-atom chain-building by optimizing MODELLER energy function using conformational space annealing;Joo;Proteins,2009

3. Multiple sequence alignment by conformational space annealing;Joo;Biophys J,2008

4. De novo protein structure prediction by dynamic fragment assembly and conformational space annealing;Lee;Proteins,2011

5. Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction;Zhou;Protein Sci,2002

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