Adaptive Smith-Waterman residue match seeding for protein structural alignment
Author:
Affiliation:
1. Université de Toulouse, INSA, UPS, INP, LISBP; 135 Avenue de Rangueil F-31077 Toulouse France
2. CNRS, UMR5504; F-31400 Toulouse France
3. INRA, UMR792 Ingénierie des Systèmes Biologiques et des Procédés; F-31400 Toulouse France
Funder
French ANR national research agency
Publisher
Wiley
Subject
Molecular Biology,Biochemistry,Structural Biology
Link
http://onlinelibrary.wiley.com/wol1/doi/10.1002/prot.24327/fullpdf
Reference114 articles.
1. HOMSTRAD: a database of protein structure alignments of homologous families;Mizuguchi;Protein Sci,1998
2. Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database;Gowri;Nucleic Acids Res,2003
3. SISPHUS-structural alignments for proteins with non-trivial relationships;Andreeva;Nucleic Acids Res,2007
4. The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution;Greene;Nucleic Acids Res,2007
5. TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method;Leslin;Nucleic Acids Res,2007
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