Implicit vs. Explicit Solvent Models for Calculating X‐ray Solution Scattering Curves#

Author:

Ganesan Prabhakar12,Kim Jong Goo12,Lee Jae Hyuk1,Kim Jeongho3,Ihee Hyotcherl12

Affiliation:

1. Department of Chemistry Korea Advanced Institute of Science and Technology (KAIST) Daejeon 305‐701 Republic of Korea

2. Center for Nanomaterials and Chemical Reactions Institute for Basic Science (IBS) Daejeon 305‐701 Republic of Korea

3. Department of Chemistry Inha University Incheon 402‐751 Republic of Korea

Abstract

Theoretical calculation of X‐ray solution scattering curves of proteins in the solution phase is strongly influenced by solvent contributions in the form of solvent‐excluded volume and hydration layer that are generally represented either implicitly or explicitly. To investigate the effect of the implicit and explicit solvent models on the calculated scattering curves, we developed a new program, X‐ray Solution Scattering (XSoS) based on implicit (XSoS‐implicit) and explicit (XSoS‐explicit) solvent models. Both XSoS‐implicit and XSoS‐explicit can calculate X‐ray solution scattering curves with high accuracy. Overall, the implicit solvent model has practical advantages over the explicit solvent model for the analysis of experimental X‐ray solution scattering data.

Publisher

Wiley

Subject

General Chemistry

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