Ultrasensitive DNA Origami Plasmon Sensor for Accurate Detection in Circulating Tumor DNAs

Author:

Chen Zhi12ORCID,Meng Changle1,Wang Xueliang1,Chen Jiajie1,Deng Jiefeng3,Fan Taojian1,Wang Lude4,Lin Huiling5,Huang Hao16,Li Shuang3,Sun Shuo1,Qu Junle1,Fan Dianyuan17,Zhang Xueji18,Liu Yingxia9,Shao Yonghong1,Zhang Han1

Affiliation:

1. State Key Laboratory of Radio Frequency Heterogeneous Integration Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province College of Physics and Optoelectronics Engineering Shenzhen University Shenzhen 518060 P.R. China

2. Shenzhen International Institute for Biomedical Research Shenzhen 518110 P.R. China

3. College of Pharmacy Dali University Dali 671000 P.R. China

4. School of Artificial Intelligence and Information Technology Nanjing University of Chinese Medicine No. 138 Xianling Rd. Nanjing Jiangsu 210023 P.R. China

5. Hengyang Medical College University of South China Hengyang Hunan 421001 P.R. China

6. The Sixth Affiliated Hospital of Guangzhou Medical University Qingyuan Guangdong 511518 P.R. China

7. International Collaborative Laboratory of 2D Materials for Optoelectronic Science and Technology of Ministry of Education Shenzhen University Shenzhen 518060 P.R. China

8. School of Biomedical Engineering Medical School Shenzhen University Shenzhen 518060 P.R. China

9. National Clinical Research Center for Infectious Disease State Key Discipline of Infectious Disease The Third People's Hospital of Shenzhen Second Hospital Affiliated to Southern University of Science and Technology Shenzhen 518112 P.R. China

Abstract

AbstractEarly lung cancer screening by computed tomography is hampered by pulmonary nodules caused by massive COVID‐19 infections, necessitating an ultrasensitive approach for the early diagnosis of lung cancers at the single‐base level from circular tumor DNAs (ctDNAs). This study introduces an approach that merges DNA origami and DNA scissors technologies in a framework of surface plasmon resonance (SPR) biosensors. By combining the precision of DNA origami probes with the inherent single‐base resolution of DNA scissors, this method systematically addresses the limitations of conventional SPR techniques, resulting in enhanced detection accuracy. The synergistic interplay between DNA scissors and DNA origami enables the SPR biosensors to achieve unprecedented levels of sensitivity, precision, and practical utility. This efficacy allows the precise identification of mutations, demonstrated here by detection of the T790M mutation in the EGFR gene and the G12C mutation in the KRAS gene of non‐small cell lung cancer patients. With this technique, single‐base resolution as well as near zeptomolar‐level sensitivity is achieved. As a result, this discovery holds significant potential to advance the field of precision diagnostics.

Funder

National Natural Science Foundation of China

Department of Education of Guangdong Province

State Key Laboratory of Luminescence and Applications

Natural Science Foundation of Guangdong Province

Publisher

Wiley

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