Valid Monte Carlo Permutation Tests for Genetic Case-Control Studies With Missing Genotypes

Author:

Kinnamon Daniel D.12,Martin Eden R.2

Affiliation:

1. Division of Human Genetics, Department of Internal Medicine; The Ohio State University Wexner Medical Center; Columbus Ohio United States of America

2. Dr. John T. Macdonald Foundation Department of Human Genetics; University of Miami Miller School of Medicine; Miami Florida United States of America

Funder

National Human Genome Research Institute

Publisher

Wiley

Subject

Genetics (clinical),Epidemiology

Reference46 articles.

1. PRESTO: rapid calculation of order statistic distributions and multiple-testing adjusted P-values via permutation for one and two-stage genetic association studies;Browning;BMC Bioinformatics,2008

2. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls;Burton;Nature,2007

3. Analysis of multiple SNPs in a candidate gene or region;Chapman;Genet Epidemiol,2008

4. Chung EY Romano JP 2011 Exact and asymptotically robust permutation tests Technical Report No. 2011-05, General Department Series Stanford, CA Stanford University http://statistics.stanford.edu/∼ckirby/reports/2010_2019/reports2011.html

5. The use of confidence or fiducial limits illustrated in the case of the binomial;Clopper;Biometrika,1934

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