Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment-Reference-Cited by-同舟云学术

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Published:2021-09-13 Issue:12 Volume:89 Page:1800-1823
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Lensink Marc F.¹^ORCID,Brysbaert Guillaume¹,Mauri Théo¹,Nadzirin Nurul²,Velankar Sameer²,Chaleil Raphael A. G.³^ORCID,Clarence Tereza³,Bates Paul A.³^ORCID,Kong Ren⁴,Liu Bin⁴,Yang Guangbo⁴,Liu Ming⁴,Shi Hang⁴,Lu Xufeng⁴,Chang Shan⁴^ORCID,Roy Raj S.⁵,Quadir Farhan⁵,Liu Jian⁵,Cheng Jianlin⁵⁶,Antoniak Anna⁷,Czaplewski Cezary⁷^ORCID,Giełdoń Artur⁷,Kogut Mateusz⁷,Lipska Agnieszka G.⁷,Liwo Adam⁷,Lubecka Emilia A.⁸,Maszota‐Zieleniak Martyna⁷,Sieradzan Adam K.⁷,Ślusarz Rafał⁷,Wesołowski Patryk A.⁷⁹,Zięba Karolina⁷,Del Carpio Muñoz Carlos A.¹⁰,Ichiishi Eiichiro¹¹,Harmalkar Ameya¹²,Gray Jeffrey J.¹²,Bonvin Alexandre M. J. J.¹³^ORCID,Ambrosetti Francesco¹³,Vargas Honorato Rodrigo¹³,Jandova Zuzana¹³,Jiménez‐García Brian¹³,Koukos Panagiotis I.¹³,Van Keulen Siri¹³,Van Noort Charlotte W.¹³,Réau Manon¹³,Roel‐Touris Jorge¹³,Kotelnikov Sergei¹⁴¹⁵¹⁶,Padhorny Dzmitry¹⁴¹⁵^ORCID,Porter Kathryn A.¹⁷,Alekseenko Andrey¹⁴¹⁵¹⁸,Ignatov Mikhail¹⁴¹⁵,Desta Israel¹⁷,Ashizawa Ryota¹⁴¹⁵,Sun Zhuyezi¹⁷,Ghani Usman¹⁷,Hashemi Nasser¹⁷,Vajda Sandor¹⁷¹⁹^ORCID,Kozakov Dima¹⁴¹⁵^ORCID,Rosell Mireia²⁰²¹,Rodríguez‐Lumbreras Luis A.²⁰²¹,Fernandez‐Recio Juan²⁰²¹^ORCID,Karczynska Agnieszka²²,Grudinin Sergei²²^ORCID,Yan Yumeng²³,Li Hao²³,Lin Peicong²³,Huang Sheng‐You²³^ORCID,Christoffer Charles²⁴^ORCID,Terashi Genki²⁵,Verburgt Jacob²⁵,Sarkar Daipayan²⁵,Aderinwale Tunde²⁴,Wang Xiao²⁴,Kihara Daisuke²⁴²⁵^ORCID,Nakamura Tsukasa²⁶,Hanazono Yuya²⁷,Gowthaman Ragul²⁸²⁹,Guest Johnathan D.²⁸²⁹,Yin Rui²⁸²⁹,Taherzadeh Ghazaleh²⁸²⁹,Pierce Brian G.²⁸²⁹,Barradas‐Bautista Didier³⁰,Cao Zhen³⁰,Cavallo Luigi³⁰,Oliva Romina³¹,Sun Yuanfei³²,Zhu Shaowen³²,Shen Yang³²^ORCID,Park Taeyong³³,Woo Hyeonuk³³,Yang Jinsol³³,Kwon Sohee³³,Won Jonghun³³,Seok Chaok³³^ORCID,Kiyota Yasuomi³⁴,Kobayashi Shinpei³⁴,Harada Yoshiki³⁴,Takeda‐Shitaka Mayuko³⁴,Kundrotas Petras J.³⁵,Singh Amar³⁵,Vakser Ilya A.³⁵^ORCID,Dapkūnas Justas³⁶^ORCID,Olechnovič Kliment³⁶,Venclovas Česlovas³⁶^ORCID,Duan Rui³⁷,Qiu Liming³⁷,Xu Xianjin³⁷,Zhang Shuang³⁷,Zou Xiaoqin⁶³⁷³⁸³⁹^ORCID,Wodak Shoshana J.⁴⁰^ORCID

Affiliation:

1. CNRS UMR8576 UGSF, Institute for Structural and Functional Glycobiology University of Lille Lille France

2. Protein Data Bank in Europe (PDBe), European Molecular Biology Laboratory European Bioinformatics Institute (EMBL‐EBI) Cambridge UK

3. Biomolecular Modelling Laboratory The Francis Crick Institute London UK

4. Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering Jiangsu University of Technology Changzhou China

5. Department of Electrical Engineering and Computer Science University of Missouri Columbia Missouri USA

6. Institute for Data Science and Informatics University of Missouri Columbia Missouri USA

7. Faculty of Chemistry University of Gdansk Gdansk Poland

8. Faculty of Electronics, Telecommunications and Informatics Gdansk University of Technology Gdansk Poland

9. Intercollegiate Faculty of Biotechnology University of Gdansk and Medical University of Gdansk Gdansk Poland

10. Graduate School of Medical Sciences Nagoya City University Nagoya Japan

11. International University of Health and Welfare Hospital (IUHW Hospital) Nasushiobara City Japan

12. Chemical and Biomolecular Engineering Johns Hopkins University Baltimore Maryland USA

13. Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science Utrecht University Utrecht The Netherlands

14. Department of Applied Mathematics and Statistics Stony Brook University Stony Brook New York USA

15. Laufer Center for Physical and Quantitative Biology Stony Brook University Stony Brook New York USA

16. Innopolis University Russia

17. Department of Biomedical Engineering Boston University Boston Massachusetts USA

18. Institute of Computer‐Aided Design of the Russian Academy of Sciences Moscow Russia

19. Department of Chemistry Boston University Boston Massachusetts USA

20. Instituto de Ciencias de la Vid y del Vino (ICVV) CSIC – Universidad de la Rioja – Gobierno de La Rioja Logrono Spain

21. Barcelona Supercomputing Center (BSC) Barcelona Spain

22. Université Grenoble Alpes, Inria, CNRS, Grenoble INP, LJK Grenoble France

23. School of Physics Huazhong University of Science and Technology Wuhan China

24. Department of Computer Science Purdue University West Lafayette Indiana USA

25. Department of Biological Sciences Purdue University West Lafayette Indiana USA

26. Graduate School of Information Sciences Tohoku University Sendai Miyagi Japan

27. Institute for Quantum Life Science, National Institutes for Quantum and Radiological Science and Technology Tokai Ibaraki Japan

28. University of Maryland Institute for Bioscience and Biotechnology Research Rockville Maryland USA

29. Department of Cell Biology and Molecular Genetics University of Maryland Maryland USA

30. King Abdullah University of Science and Technology Thuwal Saudi Arabia

31. University of Naples “Parthenope” Napoli Italy

32. Department of Electrical and Computer Engineering Texas A&M University Texas USA

33. Department of Chemistry Seoul National University Seoul Republic of Korea

34. School of Pharmacy Kitasato University Minato‐ku Tokyo Japan

35. Computational Biology Program and Department of Molecular Biosciences University of Kansas Lawrence Kansas USA

36. Institute of Biotechnology, Life Sciences Center Vilnius University Vilnius Lithuania

37. Dalton Cardiovascular Research Center University of Missouri Columbia Missouri USA

38. Department of Physics and Astronomy University of Missouri Columbia Missouri USA

39. Department of Biochemistry University of Missouri Columbia Missouri USA

40. Center for Structural Biology VIB‐VUB Brussels Belgium

Funder

Cancer Research UK

Changzhou Science and Technology Bureau

Department of Energy and Climate Change

H2020 European Institute of Innovation and Technology

National Institute for Research in Computer Science and Control

Lietuvos Mokslo Taryba

Medical Research Council Canada

Ministerio de Ciencia e Innovación

Narodowe Centrum Nauki

National Institute of General Medical Sciences

National Institutes of Health

National Natural Science Foundation of China

NSF

Nederlandse Organisatie voor Wetenschappelijk Onderzoek

Wellcome Trust

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/prot.26222

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