The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins-Reference-Cited by-同舟云学术

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The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins

Published:2009 Issue:S9 Volume:77 Page:81-88
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Venclovas Česlovas,Margelevičius Mindaugas

Funder

Lithuanian State Science and Studies Foundation

Howard Hughes Medical Institute

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/prot.22515/fullpdf

Reference17 articles.

1. Protein structure prediction and structural genomics;Baker;Science,2001

2. Progress over the first decade of CASP experiments;Kryshtafovych;Proteins,2005

3. Addressing the issue of sequence-to-structure alignments in comparative modeling of CASP3 target proteins;Venclovas;Proteins,1999

4. Comparative modeling of CASP4 target proteins: combining results of sequence search with three-dimensional structure assessment;Venclovas;Proteins,2001

5. Comparative modeling in CASP5: progress is evident, but alignment errors remain a significant hindrance;Venclovas;Proteins,2003

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1. New amino acid substitution matrix brings sequence alignments into agreement with structure matches;Proteins: Structure, Function, and Bioinformatics;2021-02-02

2. SeqStruct: A New Amino Acid Similarity Matrix Based on Sequence Correlations and Structural Contacts Yields Sequence-Structure Congruence;2018-02-21

3. Bayesian nonparametrics in protein remote homology search;Bioinformatics;2016-04-22

4. Amino Acid Distribution Rules Predict Protein Fold: Protein Grammar for Beta-Strand Sandwich-Like Structures;Biomolecules;2015-01-23

5. Comprehensive analysis of DNA polymerase III α subunits and their homologs in bacterial genomes;Nucleic Acids Research;2013-10-06

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