Protein oligomer modeling guided by predicted interchain contacts in CASP14-Reference-Cited by-同舟云学术

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Protein oligomer modeling guided by predicted interchain contacts in CASP14

Published:2021-08-23 Issue:12 Volume:89 Page:1824-1833
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Baek Minkyung¹²^ORCID,Anishchenko Ivan¹²,Park Hahnbeom¹²^ORCID,Humphreys Ian R.¹²,Baker David¹²³

Affiliation:

1. Department of Biochemistry University of Washington Seattle Washington USA

2. Institute for Protein Design, University of Washington Seattle Washington USA

3. Howard Hughes Medical Institute, University of Washington Seattle Washington USA

Funder

Amgen

Division of Biological Infrastructure

Microsoft

National Institute of Allergy and Infectious Diseases

The Schmidt Family Foundation

Open Philanthropy Project

Howard Hughes Medical Institute

National Science Foundation

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/prot.26197

Reference37 articles.

1. Methods for the detection and analysis of protein–protein interactions

2. Predicting Protein–Protein Interactions from the Molecular to the Proteome Level

3. Structural Symmetry and Protein Function

4. GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure

5. Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology

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1. Computational tools to predict context-specific protein complexes;Current Opinion in Structural Biology;2024-10

2. Review and Comparative Analysis of Methods and Advancements in Predicting Protein Complex Structure;Interdisciplinary Sciences: Computational Life Sciences;2024-06

3. Deep learning in modeling protein complex structures: From contact prediction to end-to-end approaches;Current Opinion in Structural Biology;2024-04

4. Improved protein structure prediction with trRosettaX2, AlphaFold2, and optimized MSAs in CASP15;Proteins: Structure, Function, and Bioinformatics;2023-08-10

5. Improvement of protein tertiary and quaternary structure predictions using the ReFOLD refinement method and the AlphaFold2 recycling process;Bioinformatics Advances;2023-01-01

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