Transmembrane proteins—Different anchoring systems

Author:

Roterman Irena1ORCID,Stapor Katarzyna2,Konieczny Leszek3

Affiliation:

1. Department of Bioinformatics and Telemedicine Jagiellonian University‐Medical College Krakow Poland

2. Faculty of Automatic, Electronics and Computer Science, Department of Applied Informatics Silesian University of Technology Gliwice Poland

3. Chair of Medical Biochemistry Jagiellonian University‐Medical College Krakow Poland

Abstract

AbstractTransmembrane proteins are active in amphipathic environments. To stabilize the protein in such surrounding the exposure of hydrophobic residues on the protein surface is required. Transmembrane proteins are responsible for the transport of various molecules. Therefore, they often represent structures in the form of channels. This analysis focused on the stability and local flexibility of transmembrane proteins, particularly those related to their biological activity. Different forms of anchorage were identified using the fuzzy oil‐drop model (FOD) and its modified form, FOD‐M. The mainly helical as well as β‐barrel structural forms are compared with respect to the mechanism of stabilization in the cell membrane. The different anchoring system was found to stabilize protein molecules with possible local fluctuation.

Funder

Uniwersytet Jagielloński Collegium Medicum

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

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