On the stability of different experimental dimeric structures of the SL1 sequence from the genomic RNA of HIV-1 in solution: A molecular dynamics simulation and electrophoresis study
Author:
Publisher
Wiley
Subject
Organic Chemistry,Biomaterials,Biochemistry,General Medicine,Biophysics
Reference40 articles.
1. Variant Effects of Non-Native Kissing-Loop Hairpin Palindromes on HIV Replication and HIV RNA Dimerization: Role of Stem−Loop B in HIV Replication and HIV RNA Dimerization
2. Requirements for kissing-loop-mediated dimerization of human immunodeficiency virus RNA
3. A preferred region for recombinational patch repair in the 5' untranslated region of primer binding site-impaired murine leukemia virus vectors
4. Evidence that a Kissing Loop Structure Facilitates Genomic RNA Dimerisation in HIV-1
5. Correlated Template-Switching Events during Minus-Strand DNA Synthesis: a Mechanism for High Negative Interference during Retroviral Recombination
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1. RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview;Chemical Reviews;2018-01-03
2. Microsecond-Scale MD Simulations of HIV-1 DIS Kissing-Loop Complexes Predict Bulged-In Conformation of the Bulged Bases and Reveal Interesting Differences between Available Variants of the AMBER RNA Force Fields;The Journal of Physical Chemistry B;2015-11-30
3. Conformational transitions of flanking purines in HIV-1 RNA dimerization initiation site kissing complexes studied by CHARMM explicit solvent molecular dynamics;Biopolymers;2008-09
4. Insight into the intrinsic flexibility of the SL1 stem-loop from genomic RNA of HIV-1 as probed by molecular dynamics simulation;Biopolymers;2008-03
5. Conformations of Flanking Bases in HIV-1 RNA DIS Kissing Complexes Studied by Molecular Dynamics;Biophysical Journal;2007-12
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