Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges

Author:

Daneshjou Roxana1ORCID,Wang Yanran2,Bromberg Yana2,Bovo Samuele3,Martelli Pier L3,Babbi Giulia3,Lena Pietro Di4,Casadio Rita35,Edwards Matthew6ORCID,Gifford David6,Jones David T7,Sundaram Laksshman8,Bhat Rajendra Rana8,Li Xiaolin8,Pal Lipika R.9,Kundu Kunal910,Yin Yizhou910,Moult John911ORCID,Jiang Yuxiang12,Pejaver Vikas1213,Pagel Kymberleigh A.12,Li Biao14,Mooney Sean D.13ORCID,Radivojac Predrag12,Shah Sohela15,Carraro Marco16,Gasparini Alessandra1617,Leonardi Emanuela17,Giollo Manuel1618,Ferrari Carlo18,Tosatto Silvio C E1619ORCID,Bachar Eran20,Azaria Johnathan R.20,Ofran Yanay20,Unger Ron20,Niroula Abhishek21ORCID,Vihinen Mauno21,Chang Billy22,Wang Maggie H2223ORCID,Franke Andre24,Petersen Britt‐Sabina24,Pirooznia Mehdi25,Zandi Peter26,McCombie Richard27,Potash James B.28,Altman Russ B.1,Klein Teri E.1,Hoskins Roger A.29,Repo Susanna29,Brenner Steven E.29,Morgan Alexander A.30

Affiliation:

1. Department of GeneticsStanford School of Medicine Stanford California

2. Department of Biochemistry and MicrobiologyRutgers University New Brunswick New Jersey

3. Biocomputing GroupBiGeA/CIG“Luigi Galvani” Interdepartmental Center for Integrated Studies of BioinformaticsBiophysicsand BiocomplexityUniversity of Bologna Bologna Italy

4. Biocomputing Group/Department of Computer Science and EngineeringUniversity of Bologna Bologna Italy

5. “Giorgio Prodi” Interdepartmental Center for Cancer ResearchUniversity of Bologna Bologna Italy

6. Computer Science and Artificial Intelligence LaboratoryMassachusetts Institute of Technology Cambridge Massachusetts

7. Bioinformatics GroupDepartment of Computer ScienceUniversity College London London United Kingdom

8. Large‐scale Intelligent Systems LaboratoryNSF Center for Big LearningUniversity of Florida Gainesville Florida

9. Institute for Bioscience and Biotechnology ResearchUniversity of Maryland Rockville Maryland

10. Computational BiologyBioinformatics and GenomicsBiological Sciences Graduate ProgramUniversity of Maryland College Park Maryland

11. Department of Cell Biology and Molecular GeneticsUniversity of Maryland College Park Maryland

12. Department of Computer Science and InformaticsIndiana University Bloomington Indiana

13. Department of Biomedical Informatics and Medical EducationUniversity of Washington Seattle Washington

14. Gilead Sciences Foster City California

15. Qiagen Bioinformatics Redwood City California

16. Department of Biomedical ScienceUniversity of Padova Padova Italy

17. Department of Woman and Child HealthUniversity of Padova Padova Italy

18. Department of Information EngineeringUniversity of Padova Padova Italy

19. CNR Institute of Neuroscience Padova Italy

20. The Mina and Everard Goodman Faculty of Life SciencesBar‐Ilan University Ramat‐Gan Israel

21. Protein Structure and Bioinformatics GroupDepartment of Experimental Medical ScienceLund University Lund Sweden

22. Division of Biostatistics and Centre for Clinical Research and BiostatisticsJC School of Public Health and Primary CareChinese University of Hong Kong Shatin N.T. Hong Kong

23. CUHK Shenzhen Research Institute Shenzhen China

24. Institute of Clinical Molecular BiologyChristian‐Albrechts‐University Kiel Kiel Germany

25. Department of PsychiatryThe Johns Hopkins University School of Medicine Baltimore Maryland

26. Department of Mental HealthJohns Hopkins Bloomberg School of Public Health Baltimore Maryland

27. Cold Spring Harbor LaboratoryCold Spring Harbor New York

28. Department of PsychiatryUniversity of Iowa Iowa City Iowa

29. Department of Plant and Microbial BiologyUniversity of California Berkeley Berkeley California

30. Stanford School of Medicine Stanford California

Funder

National Institutes of Health

Pharmaceutical Research and Manufacturers of America Foundation

National Natural Science Foundation of China

Israel Science Foundation

National Human Genome Research Institute

Publisher

Wiley

Subject

Genetics (clinical),Genetics

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