Affiliation:
1. Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences The University of Tokyo Japan
2. Biomedical Research Institute National Institute of Advanced Industrial Science and Technology (AIST) Tsukuba Japan
3. Bioproduction Research Institute National Institute of Advanced Industrial Science and Technology (AIST) Tsukuba Japan
Abstract
Improving protein stability is important for industrial applications, and one promising method for achieving this is backbone circularization. As connector length affects stability, predicting and elucidating a more stable connector length is necessary for development of the backbone circularization method. However, the relationship between connector length and protein stability has not been completely elucidated. Here, we determined the most stable connector length for granulocyte colony‐stimulating factor by changing one residue at a time to produce connector length variants and then measuring their thermal stability. Analysis of the local structures obtained from the predicted structures of the circularized variants revealed that an approach using helix length, dihedral backbone angle, and number of unbonded hydrogen bond donors and acceptors is suitable for identifying connector lengths with higher stability.
Funder
Japan Society for the Promotion of Science
University of Tokyo
Subject
General Biochemistry, Genetics and Molecular Biology