Evaluation of Sox2 binding affinities for distinct DNA patterns using steered molecular dynamics simulation-Reference-Cited by-同舟云学术

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Evaluation of Sox2 binding affinities for distinct DNA patterns using steered molecular dynamics simulation

Published:2017-10-09 Issue:11 Volume:7 Page:1750-1767
ISSN:2211-5463
Container-title:FEBS Open Bio
language:en
Short-container-title:FEBS Open Bio

Author:

Yesudhas Dhanusha¹,Anwar Muhammad Ayaz¹,Panneerselvam Suresh¹,Kim Han-Kyul¹,Choi Sangdun¹

Affiliation:

1. Department of Molecular Science and Technology; Ajou University; Suwon Korea

Funder

Korea Health Industry Development Institute

National Research Foundation of Korea

Publisher

Wiley

Subject

General Biochemistry, Genetics and Molecular Biology

Reference62 articles.

1. Sox proteins: regulators of cell fate specification and differentiation;Kamachi;Development,2013

2. SOX2 co-occupies distal enhancer elements with distinct POU factors in ESCs and NPCs to specify cell state;Lodato;PLoS Genet,2013

3. Pairing SOX off: with partners in the regulation of embryonic development;Kamachi;Trends Genet,2000

4. Molecular basis for the genome engagement by Sox proteins;Hou;Semin Cell Dev Biol,2017

5. Computational prediction of transcription-factor binding site locations;Bulyk;Genome Biol,2003

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1. Transcription factors ERα and Sox2 have differing multiphasic DNA- and RNA-binding mechanisms;RNA;2024-05-17

2. Transcription factors ERα and Sox2 have differing multiphasic DNA and RNA binding mechanisms;2024-03-19

3. Molecular basis for SOX2-dependent regulation of super-enhancer activity;Nucleic Acids Research;2023-11-01

4. C–B–A Test of DNA Force Fields;ACS Omega;2023-03-06

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