Assessment of the model refinement category in CASP12-Reference-Cited by-同舟云学术

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Assessment of the model refinement category in CASP12

Published:2017-11-29 Issue: Volume:86 Page:152-167
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Hovan Ladislav¹,Oleinikovas Vladimiras¹,Yalinca Havva¹,Kryshtafovych Andriy²^ORCID,Saladino Giorgio¹,Gervasio Francesco Luigi¹³^ORCID

Affiliation:

1. Department of Chemistry; University College London; WC1E 6BT United Kingdom

2. Genome Center; University of California; Davis California 95616

3. Institute of Structural and Molecular Biology; University College London; London WC1E 6BT United Kingdom

Funder

BBSRC

A*STAR

Wellcome Trust

EPSRC

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Reference48 articles.

1. Assessment of the protein-structure refinement category in CASP8;MacCallum;Proteins.,2009

2. Protein structure prediction: when is it useful?;Zhang;Curr. Opin. Struct. Biol.,2009

3. Computational Methods in Drug Discovery;Sliwoski;Pharmacol. Rev.,2014

4. An integrated in silico 3D model-driven discovery of a novel, potent, and selective amidosulfonamide 5-HT1A agonist (PRX-00023) for the treatment of anxiety and depression;Becker;J. Med. Chem.,2006

5. Evaluating the usefulness of protein structure models for molecular replacement;Giorgetti;Bioinformatics.,2005

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1. Protein Retrieval via Integrative Molecular Ensembles (PRIME) through Extended Similarity Indices;Journal of Chemical Theory and Computation;2024-07-09

2. Using Local Protein Model Quality Estimates to Guide a Molecular Dynamics-Based Refinement Strategy;Methods in Molecular Biology;2023

3. Structure‐conditioned amino‐acid couplings: How contact geometry affects pairwise sequence preferences;Protein Science;2022-02-15

4. Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment;Proteins: Structure, Function, and Bioinformatics;2021-10-05

5. Evaluation of model refinement in CASP14;Proteins: Structure, Function, and Bioinformatics;2021-07-29

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