Definition and classification of evaluation units for tertiary structure prediction in CASP12 facilitated through semi-automated metrics-Reference-Cited by-同舟云学术

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Definition and classification of evaluation units for tertiary structure prediction in CASP12 facilitated through semi-automated metrics

Published:2017-10-24 Issue: Volume:86 Page:16-26
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Abriata Luciano A.¹^ORCID,Kinch Lisa N.²,Tamò Giorgio E.¹^ORCID,Monastyrskyy Bohdan³,Kryshtafovych Andriy³^ORCID,Dal Peraro Matteo¹

Affiliation:

1. Institute of Bioengineering, School of Life Sciences; École Polytechnique Fédérale de Lausanne (EPFL); Lausanne Switzerland

2. Howard Hughes Medical Institute, University of Texas Southwestern Medical Center at Dallas; Dallas Texas

3. Genome Center, University of California; Davis California

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Reference26 articles.

1. Critical assessment of methods of protein structure prediction (casp): progress and new directions in round XI;Moult;Proteins.,2016

2. CASP11 statistics and the prediction center evaluation system;Kryshtafovych;Proteins.,2016

3. ECOD: an evolutionary classification of protein domains;Cheng;PLoS Comput Biol.,2014

4. The HHpred interactive server for protein homology detection and structure prediction;Söding;Nucleic Acids Res.,2005

5. LGA: a method for finding 3D similarities in protein structures;Zemla;Nucleic Acids Res.,2003

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1. To split or not to split: CASP15 targets and their processing into tertiary structure evaluation units;Proteins: Structure, Function, and Bioinformatics;2023-05-31

2. Using steered molecular dynamic tension for assessing quality of computational protein structure models;Journal of Computational Chemistry;2022-04-27

3. Target classification in the 14th round of the critical assessment of protein structure prediction ( CASP14 );Proteins: Structure, Function, and Bioinformatics;2021-08-19

4. Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14);Proteins: Structure, Function, and Bioinformatics;2021-07-23

5. Improved protein model quality assessment by integrating sequential and pairwise features using deep learning;Bioinformatics;2020-12-01

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