Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future-Reference-Cited by-同舟云学术

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Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future

Published:2022-09-13 Issue:7-8 Volume:23 Page:
ISSN:1615-9853
Container-title:PROTEOMICS
language:en
Short-container-title:Proteomics

Author:

Jones Andrew R.¹,Deutsch Eric W.²,Vizcaíno Juan Antonio³^ORCID

Affiliation:

1. Institute of Systems, Molecular and Integrative Biology University of Liverpool Liverpool UK

2. Institute for Systems Biology Seattle Washington USA

3. European Molecular Biology Laboratory EMBL‐European Bioinformatics Institute (EMBL‐EBI) Hinxton Cambridge UK

Funder

Wellcome Trust

National Institutes of Health

European Commission

Biotechnology and Biological Sciences Research Council

National Science Foundation

Publisher

Wiley

Subject

Molecular Biology,Biochemistry

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/pmic.202200014

Reference41 articles.

1. Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

2. PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data

3. Rosenberger G. Koh C. C. Guo T. Röst H. L. Kouvonen P. Collins B. C. Heusel M. Liu Y. Caron E. Vichalkovski A. Faini M. Schubert O. T. Faridi P. Ebhardt H. A. Matondo M. Lam H. Bader S. L. Campbell D. S. Deutsch E. W. …Aebersold R.(2014).A repository of assays to quantify 10 000 human proteins by SWATH‐MS.https://doi.org/10.1038/sdata.2014.31

4. DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery

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3. Recent advances of data‐independent acquisition mass spectrometry‐based proteomics;PROTEOMICS;2023-04

4. Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work;Journal of Proteome Research;2023-01-10

5. The ProteomeXchange consortium at 10 years: 2023 update;Nucleic Acids Research;2022-11-12

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