iDVEIP: A computer‐aided approach for the prediction of viral entry inhibitory peptides

Author:

Kao Hui‐Ju1,Weng Tzu‐Hsiang2,Chen Chia‐Hung1,Chen Yu‐Chi1,Huang Kai‐Yao134ORCID,Weng Shun‐Long356

Affiliation:

1. Department of Medical Research Hsinchu MacKay Memorial Hospital Hsinchu City Taiwan

2. Department of Obstetrics and Gynecology MacKay Memorial Hospital Taipei City Taiwan

3. Department of Medicine MacKay Medical College New Taipei City Taiwan

4. Institute of Biomedical Sciences MacKay Medical College New Taipei City Taiwan

5. Department of Obstetrics and Gynecology Hsinchu MacKay Memorial Hospital Hsinchu City Taiwan

6. MacKay Junior College of Medicine Nursing and Management Taipei City Taiwan

Abstract

AbstractWith the notable surge in therapeutic peptide development, various peptides have emerged as potential agents against virus‐induced diseases. Viral entry inhibitory peptides (VEIPs), a subset of antiviral peptides (AVPs), offer a promising avenue as entry inhibitors (EIs) with distinct advantages over chemical counterparts. Despite this, a comprehensive analytical platform for characterizing these peptides and their effectiveness in blocking viral entry remains lacking. In this study, we introduce a groundbreaking in silico approach that leverages bioinformatics analysis and machine learning to characterize and identify novel VEIPs. Cross‐validation results demonstrate the efficacy of a model combining sequence‐based features in predicting VEIPs with high accuracy, validated through independent testing. Additionally, an EI type model has been developed to distinguish peptides specifically acting as Eis from AVPs with alternative activities. Notably, we present iDVEIP, a web‐based tool accessible at http://mer.hc.mmh.org.tw/iDVEIP/, designed for automatic analysis and prediction of VEIPs. Emphasizing its capabilities, the tool facilitates comprehensive analyses of peptide characteristics, providing detailed amino acid composition data for each prediction. Furthermore, we showcase the tool's utility in identifying EIs against severe acute respiratory syndrome coronavirus‐2 (SARS‐CoV‐2).

Publisher

Wiley

Cited by 1 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3