TacoxDNA: A user‐friendly web server for simulations of complex DNA structures, from single strands to origami-Reference-Cited by-同舟云学术

TacoxDNA: A user‐friendly web server for simulations of complex DNA structures, from single strands to origami

Published:2019-07-13 Issue:29 Volume:40 Page:2586-2595
ISSN:0192-8651
Container-title:Journal of Computational Chemistry
language:en
Short-container-title:J Comput Chem

Author:

Suma Antonio¹²^ORCID,Poppleton Erik³,Matthies Michael⁴,Šulc Petr³,Romano Flavio⁵,Louis Ard A.⁶,Doye Jonathan P. K.⁷,Micheletti Cristian²,Rovigatti Lorenzo⁸⁹^ORCID

Affiliation:

1. Institute for Computational Molecular ScienceTemple University Philadelphia Pennsylvania 19122

2. SISSA—Scuola Internazionale Superiore di Studi Avanzati Via Bonomea 265, 34136 Trieste Italy

3. Center for Molecular Design and BiomimeticsThe Biodesign Institute, Arizona State University 1001 South McAllister Avenue Tempe, Arizona 85281

4. Center for Advancing Electronics Dresden (cfaed), Faculty of Chemistry and Food ChemistryTechnische Universität Dresden 01062 Dresden Germany

5. Dipartimento di Scienze Molecolari e NanosistemiUniversitá Ca Foscari di Venezia Via Torino 155, 30172 Venezia Mestre Italy

6. Rudolf Peierls Centre for Theoretical PhysicsUniversity of Oxford, 1 Keble Road Oxford OX1 3NP UK

7. Physical and Theoretical Chemistry Laboratory, Department of ChemistryUniversity of Oxford South Parks Road Oxford OX1 3QZ UK

8. Dipartimento di FisicaSapienza Universitá di Roma Piazzale A. Moro 2, 00185 Rome Italy

9. CNR‐ISC Uos Sapienza, Piazzale A. Moro 2, 00185 Rome Italy

Funder

Ministry of Education

Publisher

Wiley

Subject

Computational Mathematics,General Chemistry

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/jcc.26029

Reference65 articles.

1. Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA

2. Sequence-dependent thermodynamics of a coarse-grained DNA model

3. Influence of Fluctuations on DNA Curvature

4. Thermodynamics of DNA Packaging Inside a Viral Capsid: The Role of DNA Intrinsic Thickness

5. Inferring the Diameter of a Biopolymer from Its Stretching Response

Cited by 66 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Sensing the structural and conformational properties of single-stranded nucleic acids using electrometry and molecular simulations;Scientific Reports;2024-09-04

2. Framework nucleic acid-based nanoparticles enhance temozolomide sensitivity in glioblastoma;Drug Resistance Updates;2024-09

3. Design and simulation of a wireframe DNA origami nanoactuator;The Journal of Chemical Physics;2024-07-22

4. Weak-cooperative binding of a long single-stranded DNA chain on a surface;Nucleic Acids Research;2024-07-11

5. Piggybacking functionalized DNA nanostructures into live-cell nuclei;Science Advances;2024-07-05