Bioinformatic data processing pipelines in support of next-generation sequencing-based HIV drug resistance testing: the Winnipeg Consensus

Author:

Ji Hezhao12ORCID,Enns Eric3,Brumme Chanson J.4,Parkin Neil5,Howison Mark6,Lee Emma R.1,Capina Rupert1,Marinier Eric3,Avila-Rios Santiago7,Sandstrom Paul12,Van Domselaar Gary23,Harrigan Richard8,Paredes Roger9,Kantor Rami10,Noguera-Julian Marc9ORCID

Affiliation:

1. National HIV and Retrovirology Laboratories at JC Wilt Infectious Diseases Research Centre; Public Health Agency of Canada; Winnipeg MB Canada

2. Department of Medical Microbiology and Infectious Diseases; University of Manitoba; Winnipeg MB Canada

3. Bioinformatics Core at the National Microbiology Laboratory; Public Health Agency of Canada; Winnipeg MB Canada

4. British Columbia Centre for Excellence; HIV/AIDS; Vancouver BC Canada

5. Data First Consulting Inc.; Belmont CA USA

6. Watson Institute for International and Public Affairs; Brown University; Providence RI USA

7. Centre for Research in Infectious Diseases; National Institute of Respiratory Diseases; Mexico City Mexico

8. Division of AIDS; Department of Medicine; University of British Columbia; Vancouver BC Canada

9. IrsiCaixa AIDS Research Institute; Badalona Catalonia Spain

10. Division of Infectious Diseases; Brown University Alpert Medical School; Providence RI USA

Funder

Providence/Boston Center for AIDS Research

Brown University DEANS Award

Fundació CatalunyaCaixa - La Pedrera

Canadian Federal Initiative to Address HIV and AIDS

Genomic Research and Development Initiative in Canada

Canadian Institute of Health Research

Genome British Columbia

Genome Quebec

Genome Canada

Publisher

Wiley

Subject

Infectious Diseases,Public Health, Environmental and Occupational Health

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