A west African ancestry‐associated SNP on 8q24 predicts a positive biopsy in African American men with suspected prostate cancer following PSA screening

Author:

Gu Jian1,Chery Lisly2,González Graciela M. Nogueras3,Huff Chad1,Strom Sara1,Jones Jeffrey A.456ORCID,Griffith Donald P.4,Canfield Steven E.7,Wang Xuemei3,Huang Xuelin3,Roberson Pamela2,Meng Qing H.8,Troncoso Patricia9,Ittmann Michael10ORCID,Covinsky Michael11,Scheurer Michael12,Irizarry Ramirez Margarita13ORCID,Pettaway Curtis A.2ORCID

Affiliation:

1. Department of Epidemiology The University of Texas MD Anderson Cancer Center Houston Texas USA

2. Department of Urology The University of Texas MD Anderson Cancer Center Houston Texas USA

3. Department of Biostatistics The University of Texas MD Anderson Cancer Center Houston Texas USA

4. Dan L Duncan Comprehensive Cancer Center Baylor College of Medicine Houston Texas USA

5. Department of Urology Baylor College of Medicine Houston Texas USA

6. Urology Section Michael E. DeBakey Veterans Affairs Medical Center Houston Texas USA

7. Division of Urology UTHealth McGovern Medical School Houston Texas USA

8. Department of Laboratory Medicine The University of Texas MD Anderson Cancer Center Houston Texas USA

9. Department of Pathology The University of Texas MD Anderson Cancer Center Houston Texas USA

10. Department of Pathology Baylor College of Medicine Houston Texas USA

11. Division of Pathology UTHealth McGovern Medical School Houston Texas USA

12. Department of Pediatrics Baylor College of Medicine Houston Texas USA

13. Department of Graduate Studies, Clinical Laboratory Sciences, School of Health Professions University of Puerto Rico San Juan Puerto Rico

Abstract

AbstractBackgroundAfrican American (AA) men have the highest incidence and mortality rates of prostate cancer (PCa) among all racial groups in the United States. While race is a social construct, for AA men, this overlaps with west African ancestry. Many of the PCa susceptibility variants exhibit distinct allele frequencies and risk estimates across different races and contribute substantially to the large disparities of PCa incidence among races. We previously reported that a single‐nucleotide polymorphism (SNP) in 8q24, rs7824364, was strongly associated with west African ancestry and increased risks of PCa in both AA and Puerto Rican men. In this study, we determined whether this SNP can predict biopsy positivity and detection of clinically significant disease (Gleason score [GS] ≥ 7) in a cohort of AA men with suspected PCa.MethodsSNP rs7824364 was genotyped in 199 AA men with elevated total prostate‐specific antigen (PSA) (>2.5 ng/mL) or abnormal digital rectal exam (DRE) and the associations of different genotypes with biopsy positivity and clinically significant disease were analyzed.ResultsThe variant allele carriers were significantly over‐represented in the biopsy‐positive group compared to the biopsy‐negative group (44% vs. 25.7%, p = 0.011). In the multivariate logistic regression analyses, variant allele carriers were at a more than a twofold increased risk of a positive biopsy (odds ratio [OR] = 2.14, 95% confidence interval [CI] = 1.06–4.32). Moreover, the variant allele was a predictor (OR = 2.26, 95% CI = 1.06–4.84) of a positive biopsy in the subgroup of patients with PSA < 10 ng/mL and normal DRE. The variant allele carriers were also more prevalent in cases with GS ≥ 7 compared to cases with GS < 7 and benign biopsy.ConclusionsThis study demonstrated that the west African ancestry‐specific SNP rs7824364 on 8q24 independently predicted a positive prostate biopsy in AA men who were candidates for prostate biopsy subsequent to PCa screening.

Funder

National Institute on Minority Health and Health Disparities

Beckman Coulter Foundation

Publisher

Wiley

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1. Towards equitable AI in oncology;Nature Reviews Clinical Oncology;2024-06-07

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