Protein function annotation by local binding site surface similarity-Reference-Cited by-同舟云学术

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Protein function annotation by local binding site surface similarity

Published:2013-11-22 Issue:4 Volume:82 Page:679-694
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Spitzer Russell¹,Cleves Ann E.¹,Varela Rocco¹,Jain Ajay N.¹

Affiliation:

1. Department of Bioengineering and Therapeutic Sciences; University of California; San Francisco California

Funder

NIH

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/prot.24450/fullpdf

Reference33 articles.

1. Surface-based protein binding pocket similarity;Spitzer;Proteins: Structure, Function, and Bioinformatics,2011

2. Binding site similarity analysis for the functional classification of the protein kinase family;Kinnings;J Chem Information Modeling,2009

3. Shape variation in protein binding pockets and their ligands;Kahraman;J Mol Biol,2007

4. A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction;Hoffmann;BMC Bioinformatics,2010

5. PocketMatch: A new algorithm to compare binding sites in protein structures;Yeturu;BMC Bioinformatics,2008

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