Integrating Machine Learning in Metabolomics: A Path to Enhanced Diagnostics and Data Interpretation

Author:

Xu Yudian1ORCID,Cao Linlin2,Chen Yifan2,Zhang Ziyue3,Liu Wanshan3,Li He1,Ding Chenhuan1,Pu Jun2,Qian Kun23,Xu Wei2ORCID

Affiliation:

1. Department of Traditional Chinese Medicine Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai 200127 P. R. China

2. State Key Laboratory for Oncogenes and Related Genes Division of Cardiology Renji Hospital School of Medicine Shanghai Jiao Tong University 160 Pujian Road Shanghai 200127 P. R. China

3. School of Biomedical Engineering Institute of Medical Robotics and Med‐X Research Institute Shanghai Jiao Tong University Shanghai 200030 P. R. China

Abstract

AbstractMetabolomics, leveraging techniques like NMR and MS, is crucial for understanding biochemical processes in pathophysiological states. This field, however, faces challenges in metabolite sensitivity, data complexity, and omics data integration. Recent machine learning advancements have enhanced data analysis and disease classification in metabolomics. This study explores machine learning integration with metabolomics to improve metabolite identification, data efficiency, and diagnostic methods. Using deep learning and traditional machine learning, it presents advancements in metabolic data analysis, including novel algorithms for accurate peak identification, robust disease classification from metabolic profiles, and improved metabolite annotation. It also highlights multiomics integration, demonstrating machine learning's potential in elucidating biological phenomena and advancing disease diagnostics. This work contributes significantly to metabolomics by merging it with machine learning, offering innovative solutions to analytical challenges and setting new standards for omics data analysis.

Funder

National Natural Science Foundation of China

Publisher

Wiley

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