Genotype Imputation of MetabochipSNPs Using a Study-Specific Reference Panel of ∼4,000 Haplotypes in African Americans From the Women's Health Initiative-Reference-Cited by-同舟云学术

Genotype Imputation of MetabochipSNPs Using a Study-Specific Reference Panel of ∼4,000 Haplotypes in African Americans From the Women's Health Initiative

Published:2012-02 Issue:2 Volume:36 Page:107-117
ISSN:0741-0395
Container-title:Genetic Epidemiology
language:en
Short-container-title:Genet. Epidemiol.

Author:

Liu Eric Yi¹,Buyske Steven²³,Aragaki Aaron K.⁴,Peters Ulrike⁴,Boerwinkle Eric⁵,Carlson Chris⁴,Carty Cara⁴,Crawford Dana C.⁶,Haessler Jeff⁴,Hindorff Lucia A.⁷,Marchand Loic Le⁸,Manolio Teri A.⁷,Matise Tara³,Wang Wei¹,Kooperberg Charles⁴,North Kari E.⁹,Li Yun¹⁰¹¹

Affiliation:

1. Department of Computer Science; University of North Carolina; Chapel Hill North Carolina

2. Department of Statistics; Rutgers University; Piscataway New Jersey

3. Department of Genetics; Rutgers University; Piscataway New Jersey

4. Public Health Sciences; Fred Hutchinson Cancer Research Center; Seattle Washington

5. Human Genetics Center; University of Texas Health Science Center at Houston

6. Department of Molecular Physiology and Biophysics; Center for Human Genetics Research; Vanderbilt University; Nashville Tennessee

7. Office of Population Genomics; National Human Genome Research Institute; National Institutes of Health; Bethesda Maryland

8. Epidemiology Program; University of Hawaii Cancer Center; Honolulu Hawaii

9. Department of Epidemiology; University of North Carolina; Chapel Hill North Carolina

10. Department of Genetics; University of North Carolina; Chapel Hill North Carolina

11. Department of Biostatistics; University of North Carolina; Chapel Hill North Carolina

Funder

CLHNS

National Human Genome Research Institute (NHGRI)

National Heart, Lung, and Blood Institute

Publisher

Wiley

Subject

Genetics (clinical),Epidemiology

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/gepi.21603/fullpdf

Reference40 articles.

1. Design of the women's health initiative clinical trial and observational study;Anderson;Controlled Clinical Trials,1998

2. A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals;Browning;Am J Hum Genet,2009

3. Evaluation of the Metabochip genotyping array in African Americans and implications for fine mapping of GWAS-ldentified loci: the PAGE Study;Buyske;In preparation,2011

4. Practical aspects of imputation-driven meta-analysis of genome-wide association studies;de Bakker;Hum Mol Genet,2008

5. Use of weighted reference panels based on empirical estimates of ancestry for capturing untyped variation;Egyud;Hum Genet,2009

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