Subpar reporting of pre‐analytical variables in RNA‐focused blood plasma studies

Author:

Van Der Schueren Céleste1ORCID,Decruyenaere Philippe12ORCID,Avila Cobos Francisco13ORCID,Bult Johanna14ORCID,Deleu Jill13ORCID,Dipalo Laudonia Lidia13ORCID,Helsmoortel Hetty Hilde13ORCID,Hulstaert Eva135ORCID,Morlion Annelien13ORCID,Ramos Varas Elena13ORCID,Schoofs Kathleen1367ORCID,Trypsteen Wim13ORCID,Vanden Eynde Eveline13ORCID,Van Droogenbroeck Hanne13ORCID,Verniers Kimberly13ORCID,Vandesompele Jo138ORCID,Decock Anneleen13ORCID

Affiliation:

1. Department of Biomolecular Medicine Ghent University Belgium

2. Department of Hematology Ghent University Hospital Belgium

3. OncoRNALab, Cancer Research Institute Ghent (CRIG) Belgium

4. Department of Hematology University Medical Center Groningen The Netherlands

5. Department of Dermatology AZ Sint‐Blasius Belgium

6. Translational Oncogenomics and Bioinformatics Lab Cancer Research Institute Ghent (CRIG) Belgium

7. Center for Medical Biotechnology VIB‐UGent Belgium

8. CellCarta Belgium

Abstract

Extracellular RNA (cell‐free RNA; exRNA) from blood‐derived liquid biopsies is an appealing, minimally invasive source of disease biomarkers. As pre‐analytical variables strongly influence exRNA measurements, their reporting is essential for meaningful interpretation and replication of results. The aim of this review was to chart to what extent pre‐analytical variables are documented, to pinpoint shortcomings and to improve future reporting. In total, 200 blood plasma exRNA studies published in 2018 or 2023 were reviewed for annotation of 22 variables associated with blood collection, plasma preparation, and RNA purification. Our results show that pre‐analytical variables are poorly documented, with only three out of 22 variables described in over half of the publications. The percentage of variables reported ranged from 4.6% to 54.6% (mean 24.84%) in 2023 and from 4.6% to 57.1% (mean 28.60%) in 2018. Recommendations and guidelines (i.e., BRISQ, ASCO‐CAP, BloodPAC, PPMPT, and CEN standards) have currently not resulted in improved reporting. In conclusion, our results highlight the lack of reporting pre‐analytical variables in exRNA studies and advocate for a consistent use of available standards, endorsed by funders and journals.

Funder

Kom op tegen Kanker

Fonds Wetenschappelijk Onderzoek

Stichting Tegen Kanker

Bijzonder Onderzoeksfonds UGent

Publisher

Wiley

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