Uncovering circadian rhythms in metabolic longitudinal data: A Bayesian latent class modeling approach

Abstract

Researchers in biology and medicine have increasingly focused on characterizing circadian rhythms and their potential impact on disease. Understanding circadian variation in metabolomics, the study of chemical processes involving metabolites may provide insight into important aspects of biological mechanism. Of scientific importance is developing a statistical rigorous approach for characterizing different types of 24‐hour patterns among high dimensional longitudinal metabolites. We develop a latent class approach to incorporate variation in 24‐hour patterns across metabolites where profiles are modeled with finite mixtures of distinct shape‐invariant circadian curves that themselves incorporate variation in amplitude and phase across metabolites. An efficient Markov chain Monte Carlo sampling is used to carry out Bayesian posterior computation. When the model was fit separately by individual to the data from a small group of participants, two distinct 24‐hour rhythms were identified, with one being sinusoidal and the other being more complex with multiple peaks. Interestingly, the latent pattern associated with circadian variation (simple sinusoidal curve) had a similar phase across the three participants, while the more complex latent pattern reflecting diurnal variation differed across individual. The results suggested that this modeling framework can be used to separate 24‐hour rhythms into an endogenous circadian and one or more exogenous diurnal patterns in describing human metabolism.