Quantification of Surface Tension Effects and Nucleation‐and‐Growth Rates during Self‐Assembly of Biological Condensates

Author:

Sárkány Zsuzsa12,Rocha Fernando3,Bratek‐Skicki Anna456,Tompa Peter567,Macedo‐Ribeiro Sandra12,Martins Pedro M.12ORCID

Affiliation:

1. IBMC − Instituto de Biologia Molecular e Celular Universidade do Porto Porto 4150–180 Portugal

2. i3S − Instituto de Investigação e Inovação em Saúde Universidade do Porto Porto 4150–180 Portugal

3. LEPABE − Laboratory for Process Engineering Environment Biotechnology and Energy Faculdade de Engenharia da Universidade do Porto Porto 4200‐465 Portugal

4. Jerzy Haber Institute of Catalysis and Surface Chemistry Polish Academy of Sciences Niezapominajek 8 Krakow PL30239 Poland

5. VIB‐VUB Center for Structural Biology Vlaams Instituut voor Biotechnology Brussels 1050 Ixelles Belgium

6. Structural Biology Brussels (SBB) Bioengineering Sciences Department Vrije Universiteit Brussel (VUB) Brussels B‐1050 Belgium

7. Institute of Enzymology Research Centre for Natural Sciences Budapest 1117 Hungary

Abstract

AbstractLiquid‐solid and liquid‐liquid phase separation (PS) drives the formation of functional and disease‐associated biological assemblies. Principles of phase equilibrium are here employed to derive a general kinetic solution that predicts the evolution of the mass and size of biological assemblies. Thermodynamically, protein PS is determined by two measurable concentration limits: the saturation concentration and the critical solubility. Due to surface tension effects, the critical solubility can be higher than the saturation concentration for small, curved nuclei. Kinetically, PS is characterized by the primary nucleation rate constant and a combined rate constant accounting for growth and secondary nucleation. It is demonstrated that the formation of a limited number of large condensates is possible without active mechanisms of size control and in the absence of coalescence phenomena. The exact analytical solution can be used to interrogate how the elementary steps of PS are affected by candidate drugs.

Publisher

Wiley

Subject

General Physics and Astronomy,General Engineering,Biochemistry, Genetics and Molecular Biology (miscellaneous),General Materials Science,General Chemical Engineering,Medicine (miscellaneous)

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