Multimolecular Competition Effect as a Modulator of Protein Localization and Biochemical Networks in Cell‐Size Space

Author:

Nishikawa Saki1,Sato Gaku1,Takada Sakura1ORCID,Kohyama Shunshi1ORCID,Honda Gen2ORCID,Yanagisawa Miho234ORCID,Hori Yutaka5ORCID,Doi Nobuhide1,Yoshinaga Natsuhiko67ORCID,Fujiwara Kei1ORCID

Affiliation:

1. Department of Biosciences and Informatics Faculty of Science and Technology Keio University 3‐14‐1 Hiyoshi, Kohoku‐ku Yokohama Kanagawa 223‐8522 Japan

2. Komaba Institute for Science Graduate School of Arts and Sciences The University of Tokyo Komaba 3‐8‐1 Meguro Tokyo 153‐8902 Japan

3. Graduate School of Science The University of Tokyo Hongo 7‐3‐1 Bunkyo Tokyo 113‐0033 Japan

4. Center for Complex Systems Biology Universal Biology Institute The University of Tokyo Komaba 3‐8‐1 Meguro Tokyo 153‐8902 Japan

5. Department of Applied Physics and Physico‐informatics Faculty of Science and Technology Keio University 3‐14‐1 Hiyoshi, Kohoku‐ku Yokohama Kanagawa 223‐8522 Japan

6. WPI Advanced Institute for Materials Research (WPI‐AIMR) Tohoku University Katahira 2‐1‐1, Aoba‐Ku Sendai 980‐8577 Japan

7. MathAM‐OIL AIST Sendai 980‐8577 Japan

Abstract

AbstractCells are small, closed spaces filled with various types of macromolecules. Although it is shown that the characteristics of biochemical reactions in vitro are quite different from those in living cells, the role of the co‐existence of various macromolecules in cell‐size space remains still elusive. Here, using a constructive approach, it is demonstrated that the co‐existence of various macromolecules themselves has the ability to tune protein localization for spatiotemporal regulation and a biochemical reaction system in a cell‐size space. Both experimental and theoretical analyses reveal that enhancement of interfacial effects by a large surface‐area‐to‐volume ratio facilitates membrane localization of molecules in the cell‐size space, and the interfacial effects are alleviated by competitive binding to lipid membranes among multiple proteins even if their membrane affinities are weak. These results indicate that competition for membrane binding among various macromolecules in the cell‐size space plays a role in regulating the spatiotemporal molecular organization and biochemical reaction networks. These findings shed light on the importance of surrounding molecules for biochemical reactions using purified elements in small spaces.

Funder

Japan Society for the Promotion of Science

Publisher

Wiley

Subject

General Physics and Astronomy,General Engineering,Biochemistry, Genetics and Molecular Biology (miscellaneous),General Materials Science,General Chemical Engineering,Medicine (miscellaneous)

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