Raman spectroscopy and one‐dimensional convolutional neural network modeling as a real‐time monitoring tool for in vitro transaminase‐catalyzed synthesis of a pharmaceutically relevant amine precursor

Author:

Madsen Julie Østerby12ORCID,Topalian Sebastian Olivier Nymann1ORCID,Jacobsen Mikkel Fog3,Skovby Tommy4,Gernaey Krist V.1ORCID,Myerson Allan S.2ORCID,Woodley John1ORCID

Affiliation:

1. Department of Chemical and Biochemical Engineering Technical University of Denmark Kgs. Lyngby Denmark

2. Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA

3. Route Design, Process Development H. Lundbeck A/S Valby Denmark

4. Chemical Production Development H. Lundbeck A/S Nykøbing Sjælland Denmark

Abstract

AbstractRaman spectroscopy has been used to measure the concentration of a pharmaceutically relevant model amine intermediate for positive allosteric modulators of nicotinic acetylcholine receptor in a ω‐transaminase‐catalyzed conversion. A model based on a one‐dimensional convolutional neural network was developed to translate raw data augmented Raman spectra directly into substrate concentrations, with which the conversion from ketone to amine by ω‐transaminase could be determined over time. The model showed very good predictive capabilities, with R2 values higher than 0.99 for the spectra included in the modeling and 0.964 for an independent dataset. However, the model could not extrapolate outside the concentrations specified by the model. The presented work shows the potential of Raman spectroscopy as a real‐time monitoring tool for biocatalytic reactions.

Funder

Danmarks Tekniske Universitet

H. Lundbeck A/S

Massachusetts Institute of Technology

Publisher

Wiley

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