Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta-Reference-Cited by-同舟云学术

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Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta

Published:2016-02-24 Issue: Volume:84 Page:67-75
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Ovchinnikov Sergey¹²,Kim David E.²³,Wang Ray Yu-Ruei¹²,Liu Yuan¹²,DiMaio Frank¹²,Baker David¹²³

Affiliation:

1. Department of Biochemistry; University of Washington; Washington Seattle 98195

2. Institute for Protein Design, University of Washington; Washington Seattle 98195

3. Howard Hughes Medical Institute, University of Washington; Washington Seattle 98195

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/prot.24974/fullpdf

Reference39 articles.

1. Protein structure prediction and analysis using the Robetta server;Kim;Nucleic Acids Res,2004

2. Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins;Simons;Proteins,1999

3. Relaxation of backbone bond geometry improves protein energy landscape modeling;Conway;Protein Sci,2014

4. Learning generative models for protein fold families;Balakrishnan;Proteins,2011

5. Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era;Kamisetty;Proc Natl Acad Sci USA,2013

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