Updating and profiling the natural product‐likeness of Latin American compound libraries**

Author:

Gómez‐García Alejandro1ORCID,Prinz Ann‐Kathrin2,Jiménez Daniel A. Acuña3,Zamora William J.345,Barazorda‐Ccahuana Haruna L.6,Chávez‐Fumagalli Miguel Á.6,Valli Marilia7,Andricopulo Adriano D.7,da S. Bolzani Vanderlan8,Olmedo Dionisio A.9,Solís Pablo N.9,Núñez Marvin J.10,Rodríguez Pérez Johny R.1112,Sánchez Hoover A. Valencia11,Cortés Hernández Héctor F.11,Mosquera Martinez Oscar M.13,Koch Oliver2,Medina‐Franco José L.1

Affiliation:

1. DIFACQUIM Research Group, Department of Pharmacy, School of Chemistry Universidad Nacional Autónoma de México Avenida Universidad 3000 Mexico City 04510 Mexico

2. Institute of Pharmaceutical and Medicinal Chemistry, Westfälische Wilhelms-Universität Münster 48149 Münster Germany

3. CBio3 Laboratory, School of Chemistry University of Costa Rica San Pedro, San José 11501-2060 Costa Rica

4. Laboratory of Computational Toxicology and Artificial Intelligence (LaToxCIA), Biological Testing Laboratory (LEBi) University of Costa Rica San Pedro, San José 11501-2060 Costa Rica

5. Advanced Computing Lab (CNCA) National High Technology Center (CeNAT) Pavas, San José 1174-1200 Costa Rica

6. Computational Biology and Chemistry Research Group, Vicerrectorado de Investigación Universidad Católica de Santa Maria Arequipa 04000 Peru

7. Laboratory of Medicinal and Computational Chemistry (LQMC) Centre for Research and Innovation in Biodiversity and Drug Discovery (CIBFar), São Carlos Institute of Physics (IFSC), University of São Paulo (USP) Av. João Dagnone, 1100 São Carlos, SP 13563-120 Brazil

8. Nuclei of Bioassays, Biosynthesis and Ecophysiology of Natural Products (NuBBE), Department of Organic Chemistry Institute of Chemistry, São Paulo State University (UNESP) Av. Prof. Francisco Degni, 55 Araraquara, SP 14800-900 Brazil

9. Center for Pharmacognostic Research on Panamanian Flora (CIFLORPAN), College of Pharmacy University of Panama Av. Manuel E. Batista and Jose De Fabrega Panama City 3366 Panama

10. Natural Product Research Laboratory, School of Chemistry and Pharmacy University of El Salvador Final Ave. Mártires Estudiantes del 30 de Julio San Salvador 01101 El Salvador

11. GIFAMOL Research Group, School of Chemistry Technology Universidad Tecnológica de Pereira Pereira 660003 Colombia

12. GIEPRONAL Research Group, School of Basic Sciences, Technology and Engineering Universidad Nacional Abierta y a Distancia Dosquebradas 661001 Colombia

13. GBPN Research Group, School of Chemistry Technology Universidad Tecnológica de Pereira Pereira 660003 Colombia

Abstract

AbstractCompound databases of natural products play a crucial role in drug discovery and development projects and have implications in other areas, such as food chemical research, ecology and metabolomics. Recently, we put together the first version of the Latin American Natural Product database (LANaPDB) as a collective effort of researchers from six countries to ensemble a public and representative library of natural products in a geographical region with a large biodiversity. The present work aims to conduct a comparative and extensive profiling of the natural product‐likeness of an updated version of LANaPDB and the individual ten compound databases that form part of LANaPDB. The natural product‐likeness profile of the Latin American compound databases is contrasted with the profile of other major natural product databases in the public domain and a set of small‐molecule drugs approved for clinical use. As part of the extensive characterization, we employed several chemoinformatics metrics of natural product likeness. The results of this study will capture the attention of the global community engaged in natural product databases, not only in Latin America but across the world.

Publisher

Wiley

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