Identification of mobile retrocopies during genetic testing: Consequences for routine diagnosis

Author:

Chatron Nicolas12ORCID,Cassinari Kevin3,Quenez Olivier3,Baert‐Desurmont Stéphanie4,Bardel Claire56,Buisine Marie‐Pierre7,Calpena Eduardo8,Capri Yline9,Corominas Galbany Jordi10,Diguet Flavie12,Edery Patrick12,Isidor Bertrand11,Labalme Audrey1,Le Caignec Cedric1112ORCID,Lévy Jonathan13,Lecoquierre François4,Lindenbaum Pierre1415,Pichon Olivier11,Rollat‐Farnier Pierre‐Antoine15,Simonet Thomas1617,Saugier‐Veber Pascale4,Tabet Anne‐Claude1318,Toutain Annick1920,Wilkie Andrew O. M.8,Lesca Gaetan12,Sanlaville Damien12,Nicolas Gaël3,Schluth‐Bolard Caroline12

Affiliation:

1. Genetics Department Hospices Civils de Lyon Lyon France

2. GENDEV Team, CRNL, INSERM U1028, CNRS UMR5292, UCBL1 Lyon France

3. Department of Genetics and CNR‐MAJ Normandie Univ, UNIROUEN, Inserm U1245 and Rouen University Hospital, F 76000, Normandy Center for Genomic and Personalized Medicine Rouen France

4. Department of Genetics Normandie Univ, UNIROUEN, Inserm U1245 and Rouen University Hospital, F 76000, Normandy Center for Genomic and Personalized Medicine Rouen France

5. Bioinformatics group of the Lyon University Hospital NGS facility Groupement Hospitalier Est Lyon France

6. Biostatistics and Bioinformatics Department HCL Lyon France

7. Department of Biochemistry and Molecular Biology, JPA Research Center Inserm UMR‐S 1172, Lille University, Lille University Hospital Lille France

8. Clinical Genetics Group, MRC Weatherall Institute of Molecular Medicine University of Oxford Oxford UK

9. Genetics Department, Clinical Genetics Unit Hôpital Universitaire Robert Debré Paris France

10. Department of Human Genetics Radboud University Medical Center Nijmegen The Netherlands

11. Genetics Department CHU Nantes Nantes France

12. INSERM UMR_S915, Institut du thorax Nantes University Nantes France

13. Genetics Department, Cytogenetics Unit Hôpital Universitaire Robert Debré Paris France

14. INSERM, UMR_S1087, Institut du thorax Nantes France

15. CNRS, UMR 6291 Nantes France

16. Cellular Biotechnology Center Hospices Civils de Lyon Lyon France

17. Nerve‐Muscle Interactions Team Institut NeuroMyoGène CNRS UMR 5310‐INSERM U1217‐Université Claude Bernard Lyon 1 Lyon France

18. Neuroscience Department, Human Genetics and Cognitive Function Unit Institut Pasteur Paris France

19. Genetics Department Hôpital Bretonneau, CHU Tours France

20. UMR 1253, iBrain Tours University, Inserm Tours France

Funder

Wellcome Trust

Publisher

Wiley

Subject

Genetics(clinical),Genetics

Reference38 articles.

1. CANOES: detecting rare copy number variants from whole exome sequencing data

2. Primary Immunodeficiency Caused by an Exonized Retroposed Gene Copy Inserted in theCYBBGene

3. Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations

4. GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

5. Detection of exon deletions and duplications of the mismatch repair genes in hereditary nonpolyposis colorectal cancer families using multiplex polymerase chain reaction of short fluorescent fragments;Charbonnier F.;Cancer Research,2000

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