Stochastic simulation algorithms for computational systems biology: Exact, approximate, and hybrid methods

Author:

Simoni Giulia1,Reali Federico1ORCID,Priami Corrado12,Marchetti Luca1ORCID

Affiliation:

1. The Microsoft Research—University of Trento Centre for Computational and Systems Biology (COSBI) Rovereto TN Italy

2. Department of Computer Science University of Pisa Pisa Italy

Publisher

Wiley

Subject

Biochemistry, Genetics and Molecular Biology (miscellaneous),Medicine (miscellaneous)

Reference93 articles.

1. Implicit simulation methods for stochastic chemical kinetics;Ahn T.‐H.;Journal of Applied Analysis and Computation,2015

2. Ahn T.‐H. &Sandu A.(2011a). Fully implicit tau‐leaping methods for the stochastic simulation of chemical kinetics. InProceedings of the 19th high performane computing symposia(pp. 118–125) Boston MA.

3. Implicit Second Order Weak Taylor Tau-Leaping Methods for the Stochastic Simulation of Chemical Kinetics

4. Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems

5. Simulation and validation of modelled sphingolipid metabolism in Saccharomyces cerevisiae

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