Prokaryotic Gene Prediction Using GeneMark and GeneMark.hmm-Reference-Cited by-同舟云学术

Prokaryotic Gene Prediction Using GeneMark and GeneMark.hmm

Published:2003-03 Issue:1 Volume:1 Page:4.5.1-4.5.16
ISSN:1934-3396
Container-title:Current Protocols in Bioinformatics
language:en
Short-container-title:Current Protocols in Bioinformatics

Author:

Borodovsky Mark¹,Mills Ryan²,Besemer John²,Lomsadze Alex²

Affiliation:

1. School of Biology and School of Biomedical Engineering, Georgia Institute of Technology; Atlanta Georgia

2. School of Biology, Georgia Institute of Technology; Atlanta Georgia

Publisher

Wiley

Subject

General Medicine

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/0471250953.bi0405s01/fullpdf

Reference20 articles.

1. Heuristic approach to deriving models for gene finding;Besemer;Nucleic Acids Res.,1999

2. GeneMarkS: A self-training method for prediction of gene starts in microbial genomes: Implications for finding sequence motifs in regulatory regions;Besemer;Nucleic Acids Res.,2001

3. GENMARK: Parallel gene recognition for both DNA strands;Borodovsky;Comput. Chem.,1993

4. Statistical patterns in primary structures of functional regions in the E. coli genome: I. Oligonucleotide frequencies analysis;Borodovsky;Mol. Biol.,1986a

5. Statistical patterns in primary structures of functional regions in the E. coli genome: II. Non-homogeneous Markov models;Borodovsky;Mol. Biol.,1986b

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