Affiliation:
1. Department of Biomedical Engineering, Melbourne Brain Centre Imaging Unit, Graeme Clark Institute The University of Melbourne Parkville Victoria Australia
2. School of Computer Science University of Birmingham Birmingham UK
3. The Alan Turing Institute London UK
Abstract
AbstractPurposeThe aim of this study was to develop a model‐based deep learning architecture to accurately reconstruct fiber orientation distributions (FODs) from a reduced number of diffusion‐weighted images (DWIs), facilitating accurate analysis with reduced acquisition times.MethodsOur proposed architecture, Spherical Deconvolution Network (SDNet), performed FOD reconstruction by mapping 30 DWIs to fully sampled FODs, which have been fit to 288 DWIs. SDNet included DWI‐consistency blocks within the network architecture, and a fixel‐classification penalty within the loss function. SDNet was trained on a subset of the Human Connectome Project, and its performance compared with FOD‐Net, and multishell multitissue constrained spherical deconvolution.ResultsSDNet achieved the strongest results with respect to angular correlation coefficient and sum of squared errors. When the impact of the fixel‐classification penalty was increased, we observed an improvement in performance metrics reliant on segmenting the FODs into the correct number of fixels.ConclusionInclusion of DWI‐consistency blocks improved reconstruction performance, and the fixel‐classification penalty term offered increased control over the angular separation of fixels in the reconstructed FODs.