Protein structure model refinement in CASP12 using short and long molecular dynamics simulations in implicit solvent-Reference-Cited by-同舟云学术

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Protein structure model refinement in CASP12 using short and long molecular dynamics simulations in implicit solvent

Published:2017-09 Issue:S1 Volume:86 Page:189-201
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Terashi Genki¹,Kihara Daisuke¹²^ORCID

Affiliation:

1. Department of Biological SciencesPurdue UniversityWest Lafayette Indiana47907

2. Department of Computer SciencePurdue UniversityWest Lafayette Indiana47907

Funder

Division of Biological Infrastructure

National Institute of General Medical Sciences

Division of Information and Intelligent Systems

Division of Integrative Organismal Systems

Division of Mathematical Sciences

NIH

NSF

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/prot.25373

Reference37 articles.

1. Evaluation of free modeling targets in CASP11 and ROLL

2. TOUCHSTONE: An ab initio protein structure prediction method that uses threading-based tertiary restraints

3. Assessment of template-based modeling of protein structure in CASP11

4. Cover Image, Volume 84, Issue S1

5. A Guide to Template Based Structure Prediction

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1. Protein structure prediction using the evolutionary algorithm USPEX;Proteins: Structure, Function, and Bioinformatics;2023-03-02

2. Evaluation of model refinement in CASP14;Proteins: Structure, Function, and Bioinformatics;2021-07-29

3. Can molecular dynamics simulations improve the structural accuracy and virtual screening performance of GPCR models?;PLOS Computational Biology;2021-05-13

4. Protein Structure Refinement Using Multi-Objective Particle Swarm Optimization with Decomposition Strategy;International Journal of Molecular Sciences;2021-04-23

5. Performance and Its Limits in Rigid Body Protein-Protein Docking;Structure;2020-09

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