Processing strategies and software solutions for data-independent acquisition in mass spectrometry-Reference-Cited by-同舟云学术

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Processing strategies and software solutions for data-independent acquisition in mass spectrometry

Published:2015-02-02 Issue:5-6 Volume:15 Page:964-980
ISSN:1615-9853
Container-title:PROTEOMICS
language:en
Short-container-title:Proteomics

Author:

Bilbao Aivett¹²,Varesio Emmanuel²,Luban Jeremy³,Strambio-De-Castillia Caterina³,Hopfgartner Gérard²,Müller Markus¹⁴,Lisacek Frédérique¹⁴

Affiliation:

1. Proteome Informatics Group; SIB Swiss Institute of Bioinformatics; Geneva Switzerland

2. Life Sciences Mass Spectrometry; School of Pharmaceutical Sciences; University of Geneva; University of Lausanne; Geneva Switzerland

3. Program in Molecular Medicine; University of Massachusetts Medical School; Worcester MA USA

4. Faculty of Sciences; University of Geneva; Geneva Switzerland

Funder

Swiss National Science Foundation

Publisher

Wiley

Subject

Molecular Biology,Biochemistry

Reference54 articles.

1. A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics;Nesvizhskii;J. Proteomics,2010

2. Improving protein and proteome coverage through data-independent multiplexed peptide fragmentation;Blackburn;J. Proteome Res.,2010

3. Factors that affect ion trap data-dependent MS/MS in proteomics;Wenner;J. Am. Soc. Mass Spectrom.,2004

4. Scoring proteomes with proteotypic peptide probes;Kuster;Nat. Rev. Mol. Cell Biol.,2005

5. More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC- MS/MS;Michalski;J. Proteome Res.,2011

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