The development of selected reaction monitoring methods for targeted proteomics via empirical refinement

Author:

Bereman Michael S.1,MacLean Brendan1,Tomazela Daniela M.1,Liebler Daniel C.2,MacCoss Michael J.1

Affiliation:

1. Department of Genome Sciences; University of Washington, Seattle; WA USA

2. Department of Biochemistry; Vanderbilt University School of Medicine; Nashville TN USA

Funder

NIH

NIH Genome Training Grant

Publisher

Wiley

Subject

Molecular Biology,Biochemistry

Reference54 articles.

1. Murry , K. K. Boyd , R. K. Eberlin , M. N. Langley , G. J. IUPAC standard definitions of term relating to mass spectrometry http://mass-spec.lsu.edu/msterms/index.php/Main_Page

2. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments;MacLean;Bioinformatics,2010

3. Free computational resources for designing selected reaction monitoring transitions;Cham Mead;Proteomics,2010

4. ATAQS: a computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry;Brusniak;BMC Bioinformatics,2011

5. Post analysis data acquisition for the iterative MS/MS sampling of proteomics mixtures;Hoopmann;J. Proteome Res,2009

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