MaSS‐Simulator: A Highly Configurable Simulator for Generating MS/MS Datasets for Benchmarking of Proteomics Algorithms-Reference-Cited by-同舟云学术

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MaSS‐Simulator: A Highly Configurable Simulator for Generating MS/MS Datasets for Benchmarking of Proteomics Algorithms

Published:2018-09-28 Issue:20 Volume:18 Page:1800206
ISSN:1615-9853
Container-title:PROTEOMICS
language:en
Short-container-title:Proteomics

Author:

Awan Muaaz Gul¹,Saeed Fahad²^ORCID

Affiliation:

1. Department of Computer Science Western Michigan University MI USA

2. School of Computing and Information Sciences Florida International University Miami FL USA

Funder

Foundation for the National Institutes of Health

National Science Foundation

National Institute of General Medical Sciences

Division of Advanced Cyberinfrastructure

Publisher

Wiley

Subject

Molecular Biology,Biochemistry

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/pmic.201800206

Reference23 articles.

1. Mass-spectrometric exploration of proteome structure and function

2. Small molecules, big targets: drug discovery faces the protein–protein interaction challenge

3. Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness

4. CPhos: A program to calculate and visualize evolutionarily conserved functional phosphorylation sites

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1. PgxSAVy: A tool for comprehensive evaluation of variant peptide quality in proteogenomics – catching the (un)usual suspects;Computational and Structural Biotechnology Journal;2024-12

2. Fast peak error correction algorithms for proteoform identification using top-down tandem mass spectra;Bioinformatics;2024-03-18

3. On the use of tandem mass spectra acquired from samples of evolutionarily distant organisms to validate methods for false discovery rate estimation;PROTEOMICS;2024-03-15

4. Systematic benchmarking of omics computational tools;Integrative Omics;2024

5. Mapping the tumor stress network reveals dynamic shifts in the stromal oxidative stress response;2023-10-01

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