Novel sampling strategies and a coarse‐grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI rounds 37–45-Reference-Cited by-同舟云学术

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Novel sampling strategies and a coarse‐grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI rounds 37–45

Published:2019-12-03 Issue:8 Volume:88 Page:973-985
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Roy Burman Shourya S.¹^ORCID,Nance Morgan L.²^ORCID,Jeliazkov Jeliazko R.²^ORCID,Labonte Jason W.¹^ORCID,Lubin Joseph H.¹^ORCID,Biswas Naireeta¹^ORCID,Gray Jeffrey J.¹²³⁴^ORCID

Affiliation:

1. Department of Chemical and Biomolecular Engineering Johns Hopkins University Baltimore Maryland

2. Program in Molecular Biophysics Johns Hopkins University Baltimore Maryland

3. Institute for NanoBioTechnology Johns Hopkins University Baltimore Maryland

4. Sidney Kimmel Comprehensive Cancer Center Johns Hopkins School of Medicine Baltimore Maryland

Funder

Division of Materials Research

National Cancer Institute

National Institute of General Medical Sciences

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/prot.25855

Reference53 articles.

1. Assessment of blind predictions of protein-protein interactions: Current status of docking methods

2. Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations

3. SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models

4. Protein-Protein Docking with Dynamic Residue Protonation States

5. Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles

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