Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment-Reference-Cited by-同舟云学术

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment

Published:2019-10-25 Issue:12 Volume:87 Page:1200-1221
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Lensink Marc F.¹^ORCID,Brysbaert Guillaume¹,Nadzirin Nurul²,Velankar Sameer²,Chaleil Raphaël A. G.³^ORCID,Gerguri Tereza³,Bates Paul A.³^ORCID,Laine Elodie⁴,Carbone Alessandra⁴⁵^ORCID,Grudinin Sergei⁶,Kong Ren⁷,Liu Ran‐Ran⁷,Xu Xi‐Ming⁷,Shi Hang⁷,Chang Shan⁷^ORCID,Eisenstein Miriam⁸,Karczynska Agnieszka⁹,Czaplewski Cezary⁹^ORCID,Lubecka Emilia¹⁰,Lipska Agnieszka⁹,Krupa Paweł¹¹,Mozolewska Magdalena¹²,Golon Łukasz⁹,Samsonov Sergey⁹,Liwo Adam⁹¹³,Crivelli Silvia¹⁴,Pagès Guillaume⁶,Karasikov Mikhail¹⁵,Kadukova Maria⁶¹⁶,Yan Yumeng¹⁷,Huang Sheng‐You¹⁷^ORCID,Rosell Mireia¹⁸¹⁹^ORCID,Rodríguez‐Lumbreras Luis A.¹⁸¹⁹,Romero‐Durana Miguel¹⁸,Díaz‐Bueno Lucía¹⁸,Fernandez‐Recio Juan¹⁸¹⁹²⁰^ORCID,Christoffer Charles²¹^ORCID,Terashi Genki²²,Shin Woong‐Hee²²,Aderinwale Tunde²¹,Maddhuri Venkata Subraman Sai Raghavendra²¹,Kihara Daisuke²¹^ORCID,Kozakov Dima²³^ORCID,Vajda Sandor²⁴²⁵,Porter Kathryn²⁴,Padhorny Dzmitry²³,Desta Israel²⁴,Beglov Dmitri²⁴,Ignatov Mikhail²³,Kotelnikov Sergey¹⁶²³,Moal Iain H.²^ORCID,Ritchie David W.²⁶,Chauvot de Beauchêne Isaure²⁶^ORCID,Maigret Bernard²⁶,Devignes Marie‐Dominique²⁶,Ruiz Echartea Maria E.²⁶,Barradas‐Bautista Didier²⁷,Cao Zhen²⁷,Cavallo Luigi²⁷,Oliva Romina²⁸,Cao Yue²⁹,Shen Yang²⁹^ORCID,Baek Minkyung³⁰,Park Taeyong³⁰,Woo Hyeonuk³⁰,Seok Chaok³⁰^ORCID,Braitbard Merav³¹,Bitton Lirane³²,Scheidman‐Duhovny Dina³¹³²,Dapkūnas Justas³³^ORCID,Olechnovič Kliment³³,Venclovas Česlovas³³^ORCID,Kundrotas Petras J.³⁴,Belkin Saveliy³⁴,Chakravarty Devlina³⁴,Badal Varsha D.³⁴,Vakser Ilya A.³⁴^ORCID,Vreven Thom³⁵^ORCID,Vangaveti Sweta³⁵,Borrman Tyler³⁵,Weng Zhiping³⁵^ORCID,Guest Johnathan D.³⁶³⁷,Gowthaman Ragul³⁶³⁷,Pierce Brian G.³⁶³⁷,Xu Xianjin³⁸,Duan Rui³⁸,Qiu Liming³⁸,Hou Jie³⁹,Ryan Merideth Benjamin³⁸⁴⁰,Ma Zhiwei³⁸⁴¹,Cheng Jianlin³⁹⁴⁰,Zou Xiaoqin³⁸⁴⁰⁴¹⁴²,Koukos Panagiotis I.⁴³,Roel‐Touris Jorge⁴³,Ambrosetti Francesco⁴³,Geng Cunliang⁴³^ORCID,Schaarschmidt Jörg⁴³,Trellet Mikael E.⁴³,Melquiond Adrien S. J.⁴³,Xue Li⁴³,Jiménez‐García Brian⁴³,Noort Charlotte W.⁴³,Honorato Rodrigo V.⁴³,Bonvin Alexandre M. J. J.⁴³^ORCID,Wodak Shoshana J.⁴⁴^ORCID

Affiliation:

1. University of Lille, CNRS UMR8576 UGSF, Unité de Glycobiologie Structurale et Fonctionnelle Lille France

2. European Molecular Biology Laboratory European Bioinformatics Institute (EMBL‐EBI), Wellcome Trust Genome Campus Hinxton Cambridge UK

3. Biomolecular Modelling Laboratory The Francis Crick Institute London UK

4. CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB) Sorbonne Université Paris France

5. Institut Universitaire de France (IUF) Paris France

6. Université Grenoble Alpes, CNRS, Inria, Grenoble INP, LJK Grenoble France

7. Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering Jiangsu University of Technology Changzhou China

8. Department of Molecular Genetics Weizmann Institute of Science Rehovot Israel

9. Faculty of Chemistry University of Gdańsk Gdańsk Poland

10. Institute of Informatics, Faculty of Mathematics, Physics, and Informatics University of Gdańsk Gdańsk Poland

11. Polish Academy of Sciences Institute of Physics Warsaw Poland

12. Polish Academy of Sciences Institute of Computer Science Warsaw Poland

13. School of Computational Sciences Korea Institute for Advanced Study Seoul South Korea

14. Department of Computer Science UC Davis Davis California

15. Department of Computer Science ETH Zurich Switzerland

16. Moscow Institute of Physics and Technology Dolgoprudniy Russia

17. School of Physics Huazhong University of Science and Technology Wuhan Hubei China

18. Barcelona Supercomputing Center (BSC) Barcelona Spain

19. Instituto de Ciencias de la Vid y del Vino (ICVV‐CSIC) Logroño Spain

20. Instituto de Biología Molecular de Barcelona (IBMB‐CSIC) Barcelona Spain

21. Department of Computer Science Purdue University West Lafayette Indiana

22. Department of Biological Sciences Purdue University West Lafayette Indiana

23. Laufer Center for Physical and Quantitative Biology Stony Brook University Stony Brook New York

24. Department of Biomedical Engineering Boston University Boston Massachusetts

25. Department of Chemistry Boston University Boston Massachusetts

26. University of Lorraine, CNRS, Inria, LORIA Nancy France

27. Physical Sciences and Engineering Division King Abdullah University of Science and Technology (KAUST) Thuwal Saudi Arabia

28. Department of Sciences and Technologies University of Naples “Parthenope” Napoli Italy

29. Department of Electrical and Computer Engineering Texas A&M University College Station Texas

30. Department of Chemistry Seoul National University Seoul Republic of Korea

31. Department of Biological Chemistry, Institute of Live Sciences The Hebrew University of Jerusalem Jerusalem Israel

32. School of Computer Science and Engineering The Hebrew University of Jerusalem Jerusalem Israel

33. Institute of Biotechnology Life Sciences Center, Vilnius University Vilnius Lithuania

34. Computational Biology Program and Department of Molecular Biosciences University of Kansas Lawrence Kansas

35. Bioinformatics and Integrative Biology University of Massachusetts Medical School Worcester Massachusetts

36. University of Maryland Institute for Bioscience and Biotechnology Research Rockville Maryland

37. Department of Cell Biology and Molecular Genetics University of Maryland College Park Maryland

38. Dalton Cardiovascular Research Center University of Missouri Columbia Missouri

39. Department of Computer Science University of Missouri Columbia Missouri

40. Informatics Institute University of Missouri Columbia Missouri

41. Department of Physics and Astronomy University of Missouri Columbia Missouri

42. Department of Biochemistry University of Missouri Columbia Missouri

43. Computational Structural Biology Group, Department of Chemistry, Faculty of Science Utrecht University Utrecht The Netherlands

44. VIB Structural Biology Research Center, VUB Brussels Belgium

Funder

Agence Nationale de la Recherche

Cancer Research UK

H2020 European Institute of Innovation and Technology

Lietuvos Mokslo Taryba

Medical Research Council Canada

National Institutes of Health

National Natural Science Foundation of China

National Research Foundation of Korea

National Science Foundation

Nederlandse Organisatie voor Wetenschappelijk Onderzoek

Wellcome Trust

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/prot.25838

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