Bridging the gap: Multi‐omics profiling of brain tissue in Alzheimer's disease and older controls in multi‐ethnic populations

Author:

Reddy Joseph S.1ORCID,Heath Laura2,Linden Abby Vander2,Allen Mariet1,Lopes Katia de Paiva3,Seifar Fatemeh4,Wang Erming56,Ma Yiyi7,Poehlman William L.2,Quicksall Zachary S.1,Runnels Alexi8,Wang Yanling3,Duong Duc M.4,Yin Luming4,Xu Kaiming4,Modeste Erica S.4,Shantaraman Anantharaman4,Dammer Eric B.4,Ping Lingyan4,Oatman Stephanie R.1,Scanlan Jo2,Ho Charlotte1,Carrasquillo Minerva M.1,Atik Merve1,Yepez Geovanna1,Mitchell Adriana O.1,Nguyen Thuy T.1,Chen Xianfeng1,Marquez David X.39,Reddy Hasini7,Xiao Harrison7,Seshadri Sudha10,Mayeux Richard7,Prokop Stefan11,Lee Edward B.12,Serrano Geidy E.13,Beach Thomas G.13,Teich Andrew F.7,Haroutunian Varham5,Fox Edward J.4,Gearing Marla4,Wingo Aliza4,Wingo Thomas4,Lah James J.4,Levey Allan I.4,Dickson Dennis W.1,Barnes Lisa L.3,De Jager Philip7,Zhang Bin56,Bennett David3,Seyfried Nicholas T.4,Greenwood Anna K.2ORCID,Ertekin‐Taner Nilüfer1

Affiliation:

1. Mayo Clinic Florida Jacksonville Florida USA

2. Sage Bionetworks Seattle Washington USA

3. Rush Alzheimer's Disease Center Rush University Medical Center Chicago Illinois USA

4. Emory University School of Medicine Atlanta Georgia USA

5. Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai New York New York USA

6. Mount Sinai Center for Transformative Disease Modeling Icahn School of Medicine at Mount Sinai New York New York USA

7. Columbia University Irving Medical Center New York New York USA

8. New York Genome Center New York New York USA

9. University of Illinois Chicago Chicago Illinois USA

10. The Glen Biggs Institute for Alzheimer's & Neurodegenerative Diseases University of Texas San Antonio Texas USA

11. University of Florida Gainesville Florida USA

12. Center for Neurodegenerative Disease Brain Bank at the University of Pennsylvania Philadelphia Pennsylvania USA

13. Banner Sun Health Research Institute Sun City Arizona USA

Abstract

AbstractINTRODUCTIONMulti‐omics studies in Alzheimer's disease (AD) revealed many potential disease pathways and therapeutic targets. Despite their promise of precision medicine, these studies lacked Black Americans (BA) and Latin Americans (LA), who are disproportionately affected by AD.METHODSTo bridge this gap, Accelerating Medicines Partnership in Alzheimer's Disease (AMP‐AD) expanded brain multi‐omics profiling to multi‐ethnic donors.RESULTSWe generated multi‐omics data and curated and harmonized phenotypic data from BA (n = 306), LA (n = 326), or BA and LA (n = 4) brain donors plus non‐Hispanic White (n = 252) and other (n = 20) ethnic groups, to establish a foundational dataset enriched for BA and LA participants. This study describes the data available to the research community, including transcriptome from three brain regions, whole genome sequence, and proteome measures.DISCUSSIONThe inclusion of traditionally underrepresented groups in multi‐omics studies is essential to discovering the full spectrum of precision medicine targets that will be pertinent to all populations affected with AD.Highlights Accelerating Medicines Partnership in Alzheimer's Disease Diversity Initiative led brain tissue profiling in multi‐ethnic populations. Brain multi‐omics data is generated from Black American, Latin American, and non‐Hispanic White donors. RNA, whole genome sequencing and tandem mass tag proteomicsis completed and shared. Multiple brain regions including caudate, temporal and dorsolateral prefrontal cortex were profiled.

Funder

National Institute on Aging

Mayo Foundation for Medical Education and Research

National Institute of Neurological Disorders and Stroke

Arizona Department of Health Services

Arizona Biomedical Research Commission

Michael J. Fox Foundation for Parkinson's Research

Publisher

Wiley

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