An explainable machine learning model to solid adnexal masses diagnosis based on clinical data and qualitative ultrasound indicators

Author:

Fanizzi Annarita1ORCID,Arezzo Francesca23,Cormio Gennaro24,Comes Maria Colomba1,Cazzato Gerardo5,Boldrini Luca6,Bove Samantha1,Bollino Michele7,Kardhashi Anila2,Silvestris Erica2,Quarto Pietro24,Mongelli Michele3,Naglieri Emanuele8,Signorile Rahel1,Loizzi Vera24,Massafra Raffaella1

Affiliation:

1. Laboratorio Biostatistica e Bioinformatica I.R.C.C.S. Istituto Tumori ‘Giovanni Paolo II’ Bari Italy

2. Gynecologic Oncology Unit IRCCS Istituto Tumori “Giovanni Paolo II” Bari Italy

3. Department of Precision and Regenerative Medicine – Ionian Area University of Bari “Aldo Moro” Bari Italy

4. Interdisciplinar Department of Medicine University of Bari “Aldo Moro” Bari Italy

5. Section of Molecular Pathology, Department of Emergency and Organ Transplantation University of Bari “Aldo Moro” Bari Italy

6. Fondazione Policlinico Universitario “A. Gemelli” IRCCS Italy

7. Department of Obstetrics and Gynecology, Division of Gynecologic oncology, Skåne University Hospital and Lund University Faculty of Medicine, Clinical Sciences Lund Sweden

8. Medical Oncology Unit, IRCCS Istituto Tumori Giovanni Paolo II Bari Italy

Abstract

AbstractBackgroundAccurate characterization of newly diagnosed a solid adnexal lesion is a key step in defining the most appropriate therapeutic approach. Despite guidance from the International Ovarian Tumor Analyzes Panel, the evaluation of these lesions can be challenging. Recent studies have demonstrated how machine learning techniques can be applied to clinical data to solve this diagnostic problem. However, ML models can often consider as black‐boxes due to the difficulty of understanding the decision‐making process used by the algorithm to obtain a specific result.AimsFor this purpose, we propose an Explainable Artificial Intelligence model trained on clinical characteristics and qualitative ultrasound indicators to predict solid adnexal masses diagnosis.Materials & MethodsSince the diagnostic task was a three‐class problem (benign tumor, invasive cancer, or ovarian metastasis), we proposed a waterfall classification model: a first model was trained and validated to discriminate benign versus malignant, a second model was trained to distinguish nonmetastatic versus metastatic malignant lesion which occurs when a patient is predicted to be malignant by the first model. Firstly, a stepwise feature selection procedure was implemented. The classification performances were validated on Leave One Out scheme.ResultsThe accuracy of the three‐class model reaches an overall accuracy of 86.36%, and the precision per‐class of the benign, nonmetastatic malignant, and metastatic malignant classes were 86.96%, 87.27%, and 77.78%, respectively. Discussion: SHapley Additive exPlanations were performed to visually show how the machine learning model made a specific decision. For each patient, the SHAP values expressed how each characteristic contributed to the classification result. Such information represents an added value for the clinical usability of a diagnostic system.ConclusionsThis is the first work that attempts to design an explainable machine‐learning tool for the histological diagnosis of solid masses of the ovary.

Funder

Ministero della Salute

Publisher

Wiley

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