Identification of SARS‐CoV‐2 Omicron variant using spike gene target failure and genotyping assays, Gauteng, South Africa, 2021-Reference-Cited by-同舟云学术

Identification of SARS‐CoV‐2 Omicron variant using spike gene target failure and genotyping assays, Gauteng, South Africa, 2021

Published:2022-05-08 Issue:8 Volume:94 Page:3676-3684
ISSN:0146-6615
Container-title:Journal of Medical Virology
language:en
Short-container-title:Journal of Medical Virology

Author:

Subramoney Kathleen¹²^ORCID,Mtileni Nkhensani¹,Bharuthram Avani¹²,Davis Ashlyn¹,Kalenga Beauty¹,Rikhotso Mikateko¹,Maphahlele Mpho¹,Giandhari Jennifer³,Naidoo Yeshnee³,Pillay Sureshnee³,Ramphal Upasana³^ORCID,Ramphal Yajna³,Tegally Houriiyah³,Wilkinson Eduan⁴,Mohale Thabo⁵,Ismail Arshad⁵,Mashishi Bonolo¹²,Mbenenge Nonhlanhla¹²,de Oliveira Tulio³⁴,Makatini Zinhle¹²,Fielding Burtram C.⁶^ORCID,Treurnicht Florette K.¹²,

Affiliation:

1. Department of Virology, National Health Laboratory Service Charlotte Maxeke Johannesburg Academic Hospital Johannesburg South Africa

2. School of Pathology, Faculty of Health Sciences University of the Witwatersrand Johannesburg South Africa

3. KwaZulu‐Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine University of KwaZulu‐Natal Durban South Africa

4. Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking Stellenbosch University Stellenbosch South Africa

5. Sequencing Core Facility National Institute for Communicable Diseases Johannesburg South Africa

6. Department of Medical Biosciences, Molecular Biology and Virology Research Laboratory University of the Western Cape Bellville South Africa

Funder

Medical Research Council

National Research Foundation

National Health Laboratory Service

Publisher

Wiley

Subject

Infectious Diseases,Virology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/jmv.27797

Reference21 articles.

1. Centres for Disease Control and Prevention (CDC) [Internet].2021. Accessed December 8 2021.https://www.cdc.gov/coronavirus/2019-ncov/variants/variant-classifications.html?CDC_AA_refVal

2. The Spike D614G mutation increases SARS-CoV-2 infection of multiple human cell types

3. Detection of a SARS-CoV-2 variant of concern in South Africa

4. TegallyH WilkinsonE AlthausCL et al. Rapid replacement of the Beta variant by the Delta variant in South Africa.medRxiv.2021.doi:10.1101/2021.09.23.21264018

5. A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

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