OPUS‐SSF: A side‐chain‐inclusive scoring function for ranking protein structural models-Reference-Cited by-同舟云学术

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OPUS‐SSF: A side‐chain‐inclusive scoring function for ranking protein structural models

Published:2019-04-11 Issue:6 Volume:28 Page:1157-1162
ISSN:0961-8368
Container-title:Protein Science
language:en
Short-container-title:Protein Science

Author:

Xu Gang¹,Ma Tianqi²³,Wang Qinghua⁴,Ma Jianpeng¹²³⁴

Affiliation:

1. School of Life SciencesTsinghua University Beijing 100084 People's Republic of China

2. Applied Physics ProgramRice University Houston Texas 77005

3. Department of BioengineeringRice University Houston Texas 77005

4. Verna and Marrs Mclean Department of Biochemistry and Molecular BiologyBaylor College of Medicine Houston Texas 77030

Funder

Gillson Longenbaugh Foundation

Welch Foundation

Publisher

Wiley

Subject

Molecular Biology,Biochemistry

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/pro.3608

Reference55 articles.

1. All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins

2. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

3. An all atom force field for simulations of proteins and nucleic acids

4. The Amber biomolecular simulation programs

5. A New Force Field (ECEPP-05) for Peptides, Proteins, and Organic Molecules

Cited by 5 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. rsRNASP: A residue-separation-based statistical potential for RNA 3D structure evaluation;Biophysical Journal;2022-01

2. OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling;Journal of Chemical Theory and Computation;2020-04-23

3. OPUS-Refine: A Fast Sampling-Based Framework for Refining Protein Backbone Torsion Angles and Global Conformation;Journal of Chemical Theory and Computation;2020-01-14

4. OPUS-Rota2: An Improved Fast and Accurate Side-Chain Modeling Method;Journal of Chemical Theory and Computation;2019-08-14

5. A simple neural network implementation of generalized solvation free energy for assessment of protein structural models;RSC Advances;2019

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