Comparative analysis of sequence covariation methods to mine evolutionary hubs: Examples from selected GPCR families-Reference-Cited by-同舟云学术

Comparative analysis of sequence covariation methods to mine evolutionary hubs: Examples from selected GPCR families

Published:2014-04-23 Issue:9 Volume:82 Page:2141-2156
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Pelé Julien¹,Moreau Matthieu¹,Abdi Hervé²,Rodien Patrice¹³,Castel Hélène⁴,Chabbert Marie¹

Affiliation:

1. UMR CNRS 6214-INSERM 1083, Laboratory of Integrated Neurovascular and Mitochondrial Biology; University of Angers; 49045 Angers France

2. The University of Texas at Dallas; School of Behavioral and Brain Sciences; Richardson, TX 75080-3021 USA

3. Department of Endocrinology, Reference Centre for the pathologies of hormonal receptivity; Centre Hospitalier Universitaire of Angers; 4 rue Larrey 49933 Angers France

4. INSERM U982, Laboratory of Neuronal and Neuroendocrine Communication and Differentiation, DC2N; University of Rouen; 76821 Mont-Saint-Aignan France

Funder

French Research Agency

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Reference72 articles.

1. Scoring residue conservation;Valdar;Proteins,2002

2. Inferring trees;Whelan;Methods Mol Biol,2008

3. Evolutionary trace for prediction and redesign of protein functional sites;Wilkins;Methods Mol Biol,2012

4. Influence of conservation on calculations of amino acid covariance in multiple sequence alignments;Fodor;Proteins,2004

5. Disentangling direct from indirect co-evolution of residues in protein alignments;Burger;PLoS Comput Biol,2010

Cited by 10 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Bios2cor: an R package integrating dynamic and evolutionary correlations to identify functionally important residues in proteins;Bioinformatics;2021-01-20

2. Deciphering collaborative sidechain motions in proteins during molecular dynamics simulations;Scientific Reports;2020-09-28

3. Effect of hepatitis B virus (HBV) surface -gene variability on markers of replication during treated human immunodeficiency virus-HBV infection in Western Africa;Liver International;2018-10-17

4. GPCR-SAS: A web application for statistical analyses on G protein-coupled receptors sequences;PLOS ONE;2018-07-25

5. Evolution of chemokine receptors is driven by mutations in the sodium binding site;PLOS Computational Biology;2018-06-18