Molecular mechanism of Fe3+ binding inhibition to Vibrio metschnikovii ferric ion‐binding protein, FbpA, by rosmarinic acid and its hydrolysate, danshensu

Author:

Lu Peng1,Jiang Jinyan1,Liu Chang1,Okuda Suguru1,Itoh Hideaki1,Okamoto Ken1,Suzuki Michio1,Nagata Koji123ORCID

Affiliation:

1. Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Science The University of Tokyo Tokyo Japan

2. Agricultural Bioinformatics Research Unit, Graduate School of Agricultural and Life Science The University of Tokyo Tokyo Japan

3. Research Center for Food Safety, Graduate School of Agricultural and Life Science The University of Tokyo Tokyo Japan

Abstract

AbstractGlobal warming has increased the growth of pathogenic Vibrio bacteria, which can cause foodborne illnesses and death. Vibrio bacteria require iron for growth and survival. They utilize a ferric ion‐binding protein (FbpA) to bind and transport Fe3+ into the cell. FbpA from Vibrio metschnikovii (Vm) is a potential target for inhibiting its growth. Rosmarinic acid (RA) can block the binding of VmFbpA to Fe3+; however, the molecular mechanism of Fe3+ binding and RA inhibition to VmFbpA is unclear. In this study, we used x‐ray crystallography to determine the Fe3+‐binding mode of VmFbpA and the mechanism of RA inhibition. The structures revealed that in the Fe3+ bound form, Fe3+ was coordinated to VmFbpA by two Tyr residues, two HCO3 ions, and two water molecules in a six‐coordinated geometry. In contrast, in the inhibitor bound form, RA was initially bound to VmFbpA following gel filtration purification, but it was hydrolyzed to danshensu (DSS), which occupied the binding site as shown in an electron density map and reverse phase chromatography (RPC) analysis. Both RA and DSS exhibited a stronger binding affinity to VmFbpA, higher Fe3+ reduction capacity, and more potent bacteriostatic effect on V. metschnikovii compared with caffeic acid (CA), another hydrolysis product of RA. These results provide insight into the mechanism of iron acquisition by V. metschnikovii and inhibition by RA and DSS. Our findings offer clues on the development of effective strategies to prevent Vibrio infections.

Funder

Japan Society for the Promotion of Science

Publisher

Wiley

Subject

Molecular Biology,Biochemistry

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