Polarizable force field for RNA based on the classical drude oscillator-Reference-Cited by-同舟云学术

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Polarizable force field for RNA based on the classical drude oscillator

Published:2018-12-04 Issue:32 Volume:39 Page:2624-2646
ISSN:0192-8651
Container-title:Journal of Computational Chemistry
language:en
Short-container-title:J Comput Chem

Author:

Lemkul Justin A.¹^ORCID,MacKerell Alexander D.¹^ORCID

Affiliation:

1. Department of Pharmaceutical Sciences School of Pharmacy, University of Maryland Baltimore Maryland 21201

Funder

National Institutes of Health

National Science Foundation

Publisher

Wiley

Subject

Computational Mathematics,General Chemistry

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/jcc.25709

Reference110 articles.

1. Structural Motifs in RNA

2. RNA backbone: Consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

3. Finding 3D motifs in ribosomal RNA structures

4. In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features

5. Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

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1. On the Power and Challenges of Atomistic Molecular Dynamics to Investigate RNA Molecules;Journal of Chemical Theory and Computation;2024-08-16

2. Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes;Journal of Chemical Theory and Computation;2024-07-16

3. Quantum Mechanics Characterization of Non-Covalent Interaction in Nucleotide Fragments;Molecules;2024-07-10

4. Excited–Ground-State Transition of the RNA Strand Slippage Mechanism Captured by the Base-Specific Force Field;Journal of Chemical Theory and Computation;2024-07-09

5. Ambiguities in Decomposing Molecular Polarizability into Atomic Charge Flow and Induced Dipole Contributions;The Journal of Physical Chemistry A;2024-05-14

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