Identification of immunological bioprocesses involved in peri‐implantitis using weighted gene co‐expression network analysis

Abstract

AbstractBackgroundPeri‐implantitis is an irreversible infectious disease that occurs with high incidence. Exploring the immune responses of peri‐implantitis is key to developing targeted treatment strategies. However, there is limited research on the immune response of peri‐implantitis.MethodsThis study performed a weighted gene co‐expression network analysis to identify the peri‐implantitis related gene network and conducted a functional enrichment analysis of the gene network. Thereafter, the candidate hub genes were selected by constructing a protein‐protein interaction network and drawing an upset plot. The hub genes were identified through their significant associations with disease condition and validated using quantitative reverse transcription‐polymerase chain reaction (qRT‐PCR) analysis. Using the gene set variation analysis, the hub genes were further used to explore infiltrating immunocytes and immune factors in peri‐implantitis. Finally, the immunocytes and immune factor related hub genes were intersected to obtain the therapeutic target, which was validated using histological staining.ResultsThe peri‐implantitis related gene network was enriched in innate and adaptive immune response. Subsequently, interleukin (IL)1B, IL10, ITGAM, ITGB1, STAT3, and TLR4 were identified as hub genes. Plasmacytoid dendritic cells, macrophages, myeloid‐derived suppressor cells, natural killer T cells, and immature B cells were positively and significantly related to the hub genes IL1B, TLR4, ITGAM, and ITGB1 (correlation coefficient > 0.80). While immune factors CXCL10, IL6, and CXCL12 and hub genes IL10 and IL1B held the highest degree in the immune factors network. IL1B may be a promising therapeutic target.ConclusionThis study provides new insights into the hub genes, immunocytes, and immune factors underlying peri‐implantitis immunological bioprocess.